Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03681 ATGAATCACTTTGATCAGTGGCTTGCAGATGATACTGGACGGTGCTTCATGAGAAAGTGGAAACCCGATGAGGATAAGTTATACTTCCCAAAAATTTGTTATCGAACCTGGGAAAGCATGATCGGAACTGATGTTAAACTTGAGGATCCTGTGCTGAATGTATTTAAGGTTACTATGTCTTCAGACTTGAACGGGTATTATATACATAATGGTTTAGATAAAATCAGGGAAACCCATAATATTGAATCTTATGTGATAATCTGGTTCAAGTTTATTAAGAACAGTTTTTTCAAAATAAGTTTATATCATCATGACCGAAAAGAAACTACTTACGCTAAACCTGGGACGATCATTAAAATTGAGAACCAAATCAACCCTGGATTTGCTGTTTTTTCTGTACCTGGTTTCGTTGATAGGATGAATGGAGGTAACTCTGATACAGATTCTAAACACCTTTGGAAGTCCGAAATTTCTGCCGCTTCATTAGTGAAAAGCCAACCTCTGGGTGTCCCGGCTTCTATTGCTAAAGATTATTTAAAAAAGAATCAAGAGTTTCTGCCTGTGATGTTGTCGGACGGGTCAACTGAGGATTGGCAACTAATTTGGAACAAATATCGCAAAAATCAAGTTCACCTTGGTAGTGGATGGTACAATTTCTCGAAAGAAAATGATCTGAAGGTTGGTGATAAGTTTATTTTCTGGGAAAATGTTGGACAACACGGTGTTGTAATGACTATTGATCGTTGCTAA 750 0.372 MNHFDQWLADDTGRCFMRKWKPDEDKLYFPKICYRTWESMIGTDVKLEDPVLNVFKVTMSSDLNGYYIHNGLDKIRETHNIESYVIIWFKFIKNSFFKISLYHHDRKETTYAKPGTIIKIENQINPGFAVFSVPGFVDRMNGGNSDTDSKHLWKSEISAASLVKSQPLGVPASIAKDYLKKNQEFLPVMLSDGSTEDWQLIWNKYRKNQVHLGSGWYNFSKENDLKVGDKFIFWENVGQHGVVMTIDRC. 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03681 249 Gene3D - 141 248 IPR015300 -
Seca1g03681 249 Gene3D - 8 105 IPR015300 -
Seca1g03681 249 Pfam B3 DNA binding domain 159 234 IPR003340 GO:0003677
Seca1g03681 249 SUPERFAMILY DNA-binding pseudobarrel domain 163 236 IPR015300 -
Seca1g03681 249 SUPERFAMILY DNA-binding pseudobarrel domain 14 103 IPR015300 -
Seca1g03681 249 ProSiteProfiles B3 DNA-binding domain profile. 153 249 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03681 Seca-Chr1 107886393 107888264 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca1g03681 B3 4.4e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03681 - K01530 mtr:120577830 96.6709