Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03678 ATGGAACCACACCTTGAAGAAGACGACTCAGCAGCCTCATGGCCCAGACCTAACTCCGAACCTAAACACAACGAGAACCAAGACATTACCGCCATTGCCATGGGTGCTCCTCTTCTCCCTTTCTTGAAACCCATTCTGGAACCCGAACCAGTACCAGAACCCAAACCTGACTACTACTACACCAATGTTGTTAATGTTCCCTTTGTTCCAAACCCAGCAACAACAGATAACTTTCTCATGCACCAAAACATCAATATGGAACATTTCCCTCTAGACCCATCACCTTCACACCCTTTCTTTAGTAACAACAATAGCATTAGCAATAACCCTTTTGACACCGCCTTCGAAAGTGGGTTCTTCATGGGGAACCATTCTTCCAATTCCCCGGTTTTGATGGGTTCTTCTAGCTCTCAGCCTCTGGTGGGTAACATCGACCTGAGTTCGTGCTCTGAGTTCCCACCGAGTCTCGAACTCGAAGCCTTTAACGCACCGTTTTCGAGGCCTGTTGAGGTGGCGCAACCCACCACGCTGTTCCAGAAGCGGCGAGGGTCGGTGGAGATTTCCAGGTTGGAGACGGTGAAGAAGAAGGGGAAATGGGAAGAAGGGGATGTTGAGATTGATGATTCAGGGTTGAATTATGATTCGGATGAGAATGGGAATGATTTGAACCCAAGTGGTAATGTTAGTGTCACTGGTGGTGGTGGTGACCACAAGGGGAAGAAGAAAGGGATGCCTGCAAAGAATCTCATGGCTGAGAGGCGTAGGAGGAAGAAACTCAATGATAGGTTGTACATGCTTAGGTCTGTTGTGCCAAAGATTAGCAAGATGGATAGGGCTTCAATACTTGGGGATGCAATTGACTACTTGAAGGAGCTGTTGCAGCGGATTAATGATCTTCATAATGAACTGGAGTCAACTCCAGTTGGCTCATTACTTCCATCTTCTACAAGCTTTCAACCTTTGACACCCACTCCGCCAACCCTTCCCTGCCGGGTCAAGGAGGAGCTATATCCTGGTGCCTTGCAAAGCCCTAAAAATCAACCTGTGAAGGTGGAAGTTAGGGTAAGGGAAGGGAGAGCTGTCAACATTCATATGTTTTGTACCCGCAGACCAGGGCTTTTGCTTTCTACCATGAGGGCTTTGGATAACCTCGGGTTGGATGTTCAGCAGGCTGTAATTAGCTGTTTCAATGGCTTTGCTTTAGATGTGTTCAGAGCTGAGGTATGGTTCTTTCTCTGGTGCCAAGCTTCACTTGAATATATCCATTACTAA 1272 0.4733 MEPHLEEDDSAASWPRPNSEPKHNENQDITAIAMGAPLLPFLKPILEPEPVPEPKPDYYYTNVVNVPFVPNPATTDNFLMHQNINMEHFPLDPSPSHPFFSNNNSISNNPFDTAFESGFFMGNHSSNSPVLMGSSSSQPLVGNIDLSSCSEFPPSLELEAFNAPFSRPVEVAQPTTLFQKRRGSVEISRLETVKKKGKWEEGDVEIDDSGLNYDSDENGNDLNPSGNVSVTGGGGDHKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESTPVGSLLPSSTSFQPLTPTPPTLPCRVKEELYPGALQSPKNQPVKVEVRVREGRAVNIHMFCTRRPGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFRAEVWFFLWCQASLEYIHY. 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03678 423 Coils Coil 286 306 - -
Seca1g03678 423 MobiDBLite consensus disorder prediction 1 27 - -
Seca1g03678 423 MobiDBLite consensus disorder prediction 215 230 - -
Seca1g03678 423 FunFam BHLH transcription factor 239 307 - -
Seca1g03678 423 Pfam Helix-loop-helix DNA-binding domain 250 292 IPR011598 GO:0046983
Seca1g03678 423 SMART finulus 249 298 IPR011598 GO:0046983
Seca1g03678 423 CDD ACT_UUR-ACR-like 363 404 - -
Seca1g03678 423 Gene3D - 237 306 IPR036638 GO:0046983
Seca1g03678 423 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 246 310 IPR036638 GO:0046983
Seca1g03678 423 MobiDBLite consensus disorder prediction 207 245 - -
Seca1g03678 423 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 243 292 IPR011598 GO:0046983
Seca1g03678 423 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 122 407 - -
Seca1g03678 423 CDD bHLH_AtAMS_like 246 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03678 Seca-Chr1 107579058 107585404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03678 55 411 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 54.717 1.69e-118 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca1g03678 HLH 1.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03678 - - psat:127126761 457.218