Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03675 ATGGCGTTGGTTTCTTGTGGGTATCATTATGTTAACAGCATCTGTGGGATAAGGAATAGTTGGAGGCTGAAGGTGAGACTCATCAGAATCTGGAATATGTGCGCTGTGGCCACTCCTGGTGATCCATTCGCTACCCAGATGGTTTTTGTTGATGAAGAGGGTGGTAGAATAGAGGCAACTGTGCAGAAGCATAACATGAAGAGGTTCGCAAACGTCATGGTCGAAGGACAGGTGTATAAGATAACAAACTTTGGAGTGATGCGCAACGATGGAAACTTTAGAGCCTGTGGTCACGAATTTAAGCTCAGCTTCAACGCAAATACTAAGATCACCTTTGTTCCCACTGCTGCAATACCCTATACAGGACTGGCTTTAATTAAGTGTTCTGATATTAGGAAAATCAATGGCCACTCAACTTACCTCTTTGACTTCATGGGAATTGTTACTGGAGTGTCCGAAGAAATTAATCTAAACAAGATAGGGAGGGCTACCCGATTAATGCTCTTAGATATGGTGGATGAAATGGGAAACATCAGATGTGCTATATTTGGGCAGTTGGTGGAAGCCATTCTTGGTTTCCTTGCTTCAACTGAAACAGGACTCCCTGTTGATATTATTCAAGTAGGAAGGGTTAATCTCTATAAGGATATTCCCCTTGCTGTTGAGTTCAAGAATAGCCTTGCAGTTCATGAGATTGAAACAGATGTTGCAATTTCCAGAATATCCGATAGAGCACGACCTGTTTCTACTAGAGAAGGGTTCCTCCAATTATATCCAAGGAAGAAAGTTGGGCAGCTCCATGAGATGTTTGAGGCTACCCCTATTGTGATGATTGAAAATGTGTTGTCTATGATATGTCACCAAGGTACAAGATCAAGGTTCTGGTTTTTGCTGGGGATGACAATGCTCACTTGGATCATGTTTGATTCTGAATGCTTCTCATTGCTTAACAAGTCTTGCCGTGATCTGCTATCAGATTCCAAGGCCAGTCTTTTAAGCGGCTACAAAGAATGA 1014 0.4231 MALVSCGYHYVNSICGIRNSWRLKVRLIRIWNMCAVATPGDPFATQMVFVDEEGGRIEATVQKHNMKRFANVMVEGQVYKITNFGVMRNDGNFRACGHEFKLSFNANTKITFVPTAAIPYTGLALIKCSDIRKINGHSTYLFDFMGIVTGVSEEINLNKIGRATRLMLLDMVDEMGNIRCAIFGQLVEAILGFLASTETGLPVDIIQVGRVNLYKDIPLAVEFKNSLAVHEIETDVAISRISDRARPVSTREGFLQLYPRKKVGQLHEMFEATPIVMIENVLSMICHQGTRSRFWFLLGMTMLTWIMFDSECFSLLNKSCRDLLSDSKASLLSGYKE. 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03675 337 SUPERFAMILY Nucleic acid-binding proteins 7 115 IPR012340 -
Seca1g03675 337 Gene3D - 8 111 IPR012340 -
Seca1g03675 337 Pfam Domain of unknown function DUF223 47 113 IPR003871 -
Seca1g03675 337 CDD RPA1_DBD_A_like 22 110 - -
Seca1g03675 337 Gene3D - 116 238 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03675 Seca-Chr1 107223629 107226443 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03675 21 186 Core DNA Replication Machinery Family AT2G06510 25.143 8.10e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03675 - - lja:Lj6g3v0884310.1 191.43