Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03669 ATGTCCATCTTGCCCTCACAAACCCAAGCGGCATCTTCATCCTCTTCATCTGCGCCATCTCCCAACCCTAATCCCCAACATGGAATTGCAAACAACCCTCTTTCAGAACCCTTCTCTCCATCTCTTTCCCCGCAACTCAATCACGCTCTCCGATCTCTCCAGATCTCCGATAATCCAGGTCCATCAACTCCAGCTACAGACTTTTCTGGTGGACCTTCCGAAAAGGTGACAGAATTGGGGTCTCCGAGTGGTATGAAGGCATCACCTCAGCAGAACTCCAGAACACAGTCTAGGAGTCACTCGGGAAGACGGACGATTGGATCATACCAGTCTGTGGGGCAGACAACAGGAACCATGTCTTCCAATAGAAATCAACAGACTCCTGGCTCTGTAAATTCTCATGGAAGCACCCCTTCAACAGGGAGGAAGTCTCAGATGGTGAATGGCAATTACTTGCTCAATTTTCAGTATGATCCAATTTCCCGTTCTCAACCAAGGGGTCCTCCTCCTCCTCCTCCTGCAAGAAGGCAGCGGAAGAGAAAACCATACAATAAAGATTTGTTTTTGCAGGCAAATTACAAATTCATGGTGCTAGATTCAGGAAATTATTCACCTGAGTCGATGGATCCTGATAAAATGTTGCAGTGGGAAGATATTATCTGTCTGACGTATTTGACCCCTTTTCCAGTCCAGTGTCCAATTTGTTTGGAGTATCCCTTGTGCCCTCAAATAACCTCATGTGGACATATTTTCTGTTTCCCCTGTATTCTACAATACTTATTTATGGGTGAAGAGGATCACAAAGGTGATTGCTGGAAAAGGTGTCCTTTATGTTTTGTGATGATATCTGCCAAGGATTTATATACACTCCACATCACAAATGTCAAACAGTATCGGGTAGGAGATAATGTTGAGTTCACTTTCTTAACGCGAAAAAAAGATTCGTTTACTCTGTCACATAAAAATAAACAGGAGACAGATATCACATCATGTGGCAATGGAGATATATGTGATCCCTTTTCTAAGTTCACACTCACGTCAGATGTAGATCTCTCAGTGAGACATGCAATATCAGATCTAGATGGTTGGCTGGCTAAAGCTGATTCAGGTCTTGTTGATGACCTGGAGAGGCTCCCATATGTTTGTGCTGCAATGCAACAATTAGAACAGAGGAAGAAGTATTGGAATGAACACAAGGCTTGTGACAGTGAAAATTCTTCAAAGCTTATTGATTATGCCCATCAGATACCATCAACAGCTGCAAGTGCTATGGATACTGATGATGATAACATTTCTAATGGATCAATGACTTCCTCTGCAGATATCCATGACCAAAGTAAGGTTATAATATTGGATAAGTCAATTGCTGGAGCCTGTCAGGATCAAACTTTGGATGCGGACAAAGTATTAATGGAGCAGGAAATGAATTTATCTATTTCTTATGAAGAGAAAAATGGTATCCAAAGGAATTCAAATAGCATTGGAGATGCAAAGGAAAATGATTCCTACAATTTTTATCAGGCTGCTGATGGTCAGCATCTAATTCTTCATCCTCTGAACATGAAATGCTTACTTCACCATTATGGGGACTATGATATGCTTCCTCACAGAATAAGTGGAAGAGTTCTACAATTGGAGACAGTTACTCAGTCTGAGGCCATGAGGAGGCGGTATCGATTCCTAAGTCATTTTCCGTTAACCACAACATTTCAGGTGCCTTTTAAAATAGAGATATCTAGTTCCAAGATATTTTCTTATGATTTATAA 1767 0.4154 MSILPSQTQAASSSSSSAPSPNPNPQHGIANNPLSEPFSPSLSPQLNHALRSLQISDNPGPSTPATDFSGGPSEKVTELGSPSGMKASPQQNSRTQSRSHSGRRTIGSYQSVGQTTGTMSSNRNQQTPGSVNSHGSTPSTGRKSQMVNGNYLLNFQYDPISRSQPRGPPPPPPARRQRKRKPYNKDLFLQANYKFMVLDSGNYSPESMDPDKMLQWEDIICLTYLTPFPVQCPICLEYPLCPQITSCGHIFCFPCILQYLFMGEEDHKGDCWKRCPLCFVMISAKDLYTLHITNVKQYRVGDNVEFTFLTRKKDSFTLSHKNKQETDITSCGNGDICDPFSKFTLTSDVDLSVRHAISDLDGWLAKADSGLVDDLERLPYVCAAMQQLEQRKKYWNEHKACDSENSSKLIDYAHQIPSTAASAMDTDDDNISNGSMTSSADIHDQSKVIILDKSIAGACQDQTLDADKVLMEQEMNLSISYEEKNGIQRNSNSIGDAKENDSYNFYQAADGQHLILHPLNMKCLLHHYGDYDMLPHRISGRVLQLETVTQSEAMRRRYRFLSHFPLTTTFQVPFKIEISSSKIFSYDL. 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03669 588 PANTHER RING FINGER 10 FAMILY MEMBER 86 572 IPR039739 -
Seca1g03669 588 SUPERFAMILY RING/U-box 231 285 - -
Seca1g03669 588 FunFam RING finger protein 10 225 293 - -
Seca1g03669 588 MobiDBLite consensus disorder prediction 1 145 - -
Seca1g03669 588 MobiDBLite consensus disorder prediction 83 145 - -
Seca1g03669 588 ProSitePatterns Zinc finger RING-type signature. 247 256 IPR017907 -
Seca1g03669 588 ProSiteProfiles Zinc finger RING-type profile. 232 278 IPR001841 -
Seca1g03669 588 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 227 330 IPR013083 -
Seca1g03669 588 MobiDBLite consensus disorder prediction 158 182 - -
Seca1g03669 588 CDD RING-HC_RNF10 230 287 - -
Seca1g03669 588 SMART ring_2 232 278 IPR001841 -
Seca1g03669 588 MobiDBLite consensus disorder prediction 1 70 - -
Seca1g03669 588 Pfam Zinc finger, C3HC4 type (RING finger) 232 278 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03669 Seca-Chr1 107149044 107156452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03669 129 572 C3H Transcription Factor Family AT3G26730 55.799 1.94e-176 515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03669 K26979 - gmx:100798764 860.136