Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03661 ATGAATGCTAATGGATGCAAGTGCAAAGGCATGTGTATTGATCCGACAACTTGTGAATGTGCATTGCGTAATGGCTCTGATTTTCCCTATGTATCTCGGAATGGTGGCAGGTTAGTTGAAGCTAAAGATGTTGTGTTTGAATGCGGCCCTAAATGTGGTTGTGGTCCTGGTTGTGTGAACCGAACTTCTCAAAGAGGACTTAGATATCGTCTGGAGGTTTTCCGCACTGCGAAGAAAGGATGGGCTGTTAGATCCTGGGATTTTATACCTGCTGGAGCACCAGTTTGTGAGTACACAGGAATACTTGCTAGGACGGAAGATATGGAAAGTGTATTGGAAAACAATTATATTTTTGAGATAGATTGCTTGCAAACAATCAAAGGGCTTGGTGGAAGAGAGAGGCGGTCACAAAATGAAGCGATTCCTGCTATCCTTTTGGACAAATGTGATGACCAAAGTTCAGAAAGTGTGCCGGAGTTTTGTATTGATGCAGGATCTACTGGAAATATTGCTAGGTTTATAAATCATTGCTGTGAGCCTAATCTGTTTGTTCAATGTGTTTTGAGCACTCACCATGATTTGAAATTAGCTCGAGTGATGCTGTTTGCTGCTGACAACATACCCCCAATGCAGGTAACTCATTTTCTATATTCCCCTTATCTATCTTTTCTGGGATGGATGGTGTTAATGTATTTGGGGTTGGGAAGGGAACTGACATATGACTATGGCTATGCGCTTGATAGCGTCTTGGACTCTGATGGGAAGATAAAGCAAATGCCATGCTATTGTGGAGCCGCAGGCTGCAGGAAGCGATTATTCTAA 822 0.427 MNANGCKCKGMCIDPTTCECALRNGSDFPYVSRNGGRLVEAKDVVFECGPKCGCGPGCVNRTSQRGLRYRLEVFRTAKKGWAVRSWDFIPAGAPVCEYTGILARTEDMESVLENNYIFEIDCLQTIKGLGGRERRSQNEAIPAILLDKCDDQSSESVPEFCIDAGSTGNIARFINHCCEPNLFVQCVLSTHHDLKLARVMLFAADNIPPMQVTHFLYSPYLSFLGWMVLMYLGLGRELTYDYGYALDSVLDSDGKIKQMPCYCGAAGCRKRLF. 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03661 273 ProSiteProfiles SET domain profile. 69 218 IPR001214 GO:0005515
Seca1g03661 273 SMART PostSET_3 257 273 IPR003616 -
Seca1g03661 273 Pfam SET domain 80 210 IPR001214 GO:0005515
Seca1g03661 273 SMART set_7 69 222 IPR001214 GO:0005515
Seca1g03661 273 Gene3D SET domain 1 273 IPR046341 -
Seca1g03661 273 ProSiteProfiles Pre-SET domain profile. 4 66 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca1g03661 273 ProSiteProfiles Post-SET domain profile. 257 273 IPR003616 -
Seca1g03661 273 Pfam Pre-SET motif 3 61 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca1g03661 273 SUPERFAMILY SET domain 4 249 IPR046341 -
Seca1g03661 273 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 4 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03661 Seca-Chr1 106868005 106869612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03661 2 273 EF-hand Containing Proteins AT5G13960 60.949 2.85e-119 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca1g03661 SET 1.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03661 K11420 - gmx:100795584 453.751