Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03649 ATGCAGGACCCATCCAAGCAGCCTTTACATCAAGGTGTCAATGCAAGAAAGAGACATTATAGAGGTGTTAGGCAGAGACCATGGGGCAAATGGGCAGCCGAAATCCGCGACCCTAAAAAGGCAGCTAGAGTGTGGCTTGGAACCTTTGACACCGCAGAAGCTGCAGCAGCTGCTTATGATGCTGCTGCCTTAAAGTTCAAAGGAACCAAAGCTAAACTCAATTTTCCAGAACGTGTTATTACTCCATCAGATTACAATACTACTACTACTTCACAACTTTATAACTATGCTTCATCAGCACCAACACCAACACCACATCATGAGGCTCCATCACTTCATCTTCCACCTCCCTCAGAAGGAGGATTTCCTAACCTAATGCAATACGCGCAGGTTCTTTGGAGTAAGGATGATGATGATCTACAACGTGCTGCTTCAGGTCTTCAACAGTATCCTAATGATCCGTTTCTTTATTGTGATGATTCGAGTTCAATGTTGTTCTCATCGTCTTCATCGGCTAGTTCTATGGATCAACAACAGGTTGGAGATAACATGAGTGCTCCCAAGGGAGATTATGGTCTCAAATGGAGTGGTTTTCATGAGAGGAATCAATGA 612 0.4412 MQDPSKQPLHQGVNARKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAAAYDAAALKFKGTKAKLNFPERVITPSDYNTTTTSQLYNYASSAPTPTPHHEAPSLHLPPPSEGGFPNLMQYAQVLWSKDDDDLQRAASGLQQYPNDPFLYCDDSSSMLFSSSSSASSMDQQQVGDNMSAPKGDYGLKWSGFHERNQ. 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03649 203 Gene3D AP2/ERF domain 18 78 IPR036955 GO:0003700|GO:0006355
Seca1g03649 203 Pfam AP2 domain 19 68 IPR001471 GO:0003700|GO:0006355
Seca1g03649 203 SUPERFAMILY DNA-binding domain 19 77 IPR016177 GO:0003677
Seca1g03649 203 MobiDBLite consensus disorder prediction 165 203 - -
Seca1g03649 203 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Seca1g03649 203 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Seca1g03649 203 CDD AP2 19 77 IPR001471 GO:0003700|GO:0006355
Seca1g03649 203 PANTHER DNA-BINDING DOMAIN 14 167 IPR044808 GO:0003700|GO:0009873
Seca1g03649 203 MobiDBLite consensus disorder prediction 1 23 - -
Seca1g03649 203 MobiDBLite consensus disorder prediction 165 184 - -
Seca1g03649 203 FunFam Ethylene-responsive transcription factor 2 18 77 - -
Seca1g03649 203 ProSiteProfiles AP2/ERF domain profile. 19 76 IPR001471 GO:0003700|GO:0006355
Seca1g03649 203 SMART rav1_2 19 82 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03649 Seca-Chr1 106297522 106300307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03649 2 93 AP2-EREBP Transcription Factor Family AT5G61890 70.526 3.77e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca1g03649 AP2 1.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03649 - - gsj:114398791 217.238