Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03644 ATGTCAGAGCTTCGTGTCCTGTCCATCCCCGGAAACATGTTTTCCGGCGAGATTCCGGCGAGCATAGGGAAACTCTGGGGACTTGAGGTTCTTGAGCTGCAAGGGAACAACTTTTCTGGGAGGGTCCCGTATCAGATGAGTTATCTTGAATCTCTTAGCCTTGTTAATCTCTCTGGTAATGCTTTGTCTGGTTCCGTACCTAGTGGGTTTATTAGTTCTAGGAATGTGAGAATAGTTGATTTATCGAATAATCAATTTTCTGGTCCCATCCCAATGAATGGTTTTGGTGGTTGTGATTCCTTGAACTATTTGAAGCTGTCTCATAACTTTTTGGCTGGGGAGATTCCACCCCAAATTGGGAAATGCAGAAACTTGAGGACCCTTTTGGTTGATGGGAATATATTGGAGGGTAGGATCCCTCCTGAGATTGGGTATGTTGTTGAACTTAGAGTTCTAGATGTTTCTAGAAATAGCCTCACTGGAAGGATCCCTAGAGAGCTGGCTAATTGTATGAAATTGTCTGTGCTTGTGCTTACTGATTTGTTCGATGATCACGGTCTGAATGATGAGGGAAGCTTGGAGGATAGCTTTAGAGGAGAGTTCAATGCCTTTGTTGGGAATATTCCTCATGAAGTGTTGTTGCTTTCAAGTTTGCGGGTTTTGTGGGCGCCGAGAGCGAATCTTGGTGGAAGGTTTCCTGCTGGCTGGACAGATTCATGCTCTCTAAGAGTACTCAATTTGGCAGAGAATTATGTTAGTGGTGTCATCCCTGAGAGTTTGGGGATGTGTAAAAATTTAACTTTCTTGGACTTGAGTTCTAACAATTTAGTGGGATATCTGCCTTCTCAGCAGCTTCAGGTTCCTTGTATGATGTACTTCAATATCAGCAGGAATAATATGTCTGGCATGCTTCCAGGATTTATGAGAGAAAGCTGTCCTGAGAGTAACAACCTTGCTGCACTAGACCCTGCATTCCCAGAGTTGGGAGGTTTTAATGATGCATACTTTAGTAATCCTGTTTTGAGATTCCAAAAGAATGCTCTCATTGGATCAGGTTTTGGAGAGACTATTGTTGTTAGACACGATTTCAGTTGGAACAGTTTTGTGGGATCCTTACCTTTGTTCTCTCTTGGAGATAATCTTTTTACTGCTGGTCGTAATGTTTCCTACATGCTGTCTCTCAATAATAATAAGTTCAATGGAACTCTGCCTTATCAGCTAGTTTCTAATTGCAGTGACCTCAAGACATTGTCAGTTAACTTGAGTGTGAATCAATTATCCGGTGGGCACTCCCAAGCATTGTTTCGGGACTGCCTCCAGTTGACAGATTTTGAAGCAGCATACAACCAGATTGATGGGTCAATTGGACCTGGAATAGGTGACTCGACGATGCTTCAACGTCTTGATTTAAGTGGGAACAAACTATCTGGAGCACTGCCTAATCAGTTGGGAAACCTAAAAAACATGAAATGGATGCTTCTAGGAGGAAACAATCTAACAGGAGAAGTTCCTTCCCAACTTGGTCAATTGACTTCCCTCACTGTCTTGAATCTGTCTCACAATGCCCTAATAGGACCAATTCCAGCAAGTTTGTCAAATGCCGCAAGTCTTGAAATTCTGTTGCTAGATCACAACAACTTTTCTGGGGAGATACCTTTATCTTTTTCTGCTCTTTCCAATCTTGTTCAACTAGATGTTTCTTTCAACAATCTTTCTGGTCATATTCCACATCTTCAACACCCAAGTGATTGTGATTCCTACAAAGGGAATGAACACTTGCACTCTTGCCCTGATCCATACTCCAACTCATCTGCTTCTCTTCCAGTCCCTCTTGAAGTCCATAATTTCCATAGACAGAGGAAAGTAAGGACACTGGTTATTGCTGTGGTCACTTCTGCTTCTGTTGCTCTCTGCACACTTCTGGGAATTGTATTCGTGATATTTTATAGAAGGAGTAAATTTTGTCGCCTTAGCAGTATTAGAAGGCGACAGGTAGTGACCTTTCAAGATGTTCCAATGGAATTGAGTTATGACAGTGTGGTCACAGCTACCGGAAATTTCAGTATCCGGTATCTTATTGGCACAGGTGGCTTTGGGTCAACCTACAAGGCTGAACTGTCCCCAGGTTTTCTTGTTGCCATAAAGAGGCTGTCAATAGGTAGATTTCAAGGCATTCAACAGTTTGAAACAGAAATAAGGACATTGGGGAGAATTCGACACAAGAACCTCGTGACTCTTATTGGCTATTATGTAGGAAAGGTTGAAATGTTCTTAATTTACAACTACCTTTCTGGTGGAAACCTTGAAGCTTTCATACACGACAACTCAGGGAAAAATGTACGGTGGCCAGTTATTTACAAAATAGCAAAAGACATAGCAGAGGCCCTTGCTTACCTTCATTACTCTTGTGTTCCTCGCATAGTGCACCGGGATATCAAGCCTAGCAACATTTTACTTGATGAAGATCTTAATGCCTACTTGTCTGATTTTGGCTTGGCACGACTCCTTGAGGTATCTGAGACCCATGCCACTACTGATGTGGCAGGCACATTTGGTTATGTAGCACCTGAATATGCCACCACTTGCAGGGTTTCTGACAAAGCAGATGTTTACAGCTTTGGTGTAGTGTTATTAGAATTGATGTCTGGAAGAAAGTCACTTGATCCATCATTTTCTGAATATGGAAATGGATTCAATATTGTGCCATGGGCTGAGATGCTAATGAATGAAGGTCGTTGTTCTGAGCTATTTTCATCTGCTTTGTGGGAAGCAGGGCCTAAGGAAAAGTTGTTGGGGCTTTTAAAGATTGCATTAACATGCACAGTGGAGACTCTTTCTATTCGGCCGTCAATGAAACAGGTTCTTGAGAAATTGAAACAATTGAAAAATTGA 2892 0.4205 MSELRVLSIPGNMFSGEIPASIGKLWGLEVLELQGNNFSGRVPYQMSYLESLSLVNLSGNALSGSVPSGFISSRNVRIVDLSNNQFSGPIPMNGFGGCDSLNYLKLSHNFLAGEIPPQIGKCRNLRTLLVDGNILEGRIPPEIGYVVELRVLDVSRNSLTGRIPRELANCMKLSVLVLTDLFDDHGLNDEGSLEDSFRGEFNAFVGNIPHEVLLLSSLRVLWAPRANLGGRFPAGWTDSCSLRVLNLAENYVSGVIPESLGMCKNLTFLDLSSNNLVGYLPSQQLQVPCMMYFNISRNNMSGMLPGFMRESCPESNNLAALDPAFPELGGFNDAYFSNPVLRFQKNALIGSGFGETIVVRHDFSWNSFVGSLPLFSLGDNLFTAGRNVSYMLSLNNNKFNGTLPYQLVSNCSDLKTLSVNLSVNQLSGGHSQALFRDCLQLTDFEAAYNQIDGSIGPGIGDSTMLQRLDLSGNKLSGALPNQLGNLKNMKWMLLGGNNLTGEVPSQLGQLTSLTVLNLSHNALIGPIPASLSNAASLEILLLDHNNFSGEIPLSFSALSNLVQLDVSFNNLSGHIPHLQHPSDCDSYKGNEHLHSCPDPYSNSSASLPVPLEVHNFHRQRKVRTLVIAVVTSASVALCTLLGIVFVIFYRRSKFCRLSSIRRRQVVTFQDVPMELSYDSVVTATGNFSIRYLIGTGGFGSTYKAELSPGFLVAIKRLSIGRFQGIQQFETEIRTLGRIRHKNLVTLIGYYVGKVEMFLIYNYLSGGNLEAFIHDNSGKNVRWPVIYKIAKDIAEALAYLHYSCVPRIVHRDIKPSNILLDEDLNAYLSDFGLARLLEVSETHATTDVAGTFGYVAPEYATTCRVSDKADVYSFGVVLLELMSGRKSLDPSFSEYGNGFNIVPWAEMLMNEGRCSELFSSALWEAGPKEKLLGLLKIALTCTVETLSIRPSMKQVLEKLKQLKN. 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03644 963 ProSiteProfiles Protein kinase domain profile. 687 963 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g03644 963 Pfam Leucine rich repeat 465 523 IPR001611 GO:0005515
Seca1g03644 963 SMART serkin_6 687 962 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g03644 963 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 763 963 - -
Seca1g03644 963 Gene3D Ribonuclease Inhibitor 358 606 IPR032675 -
Seca1g03644 963 SUPERFAMILY RNI-like 2 313 - -
Seca1g03644 963 SUPERFAMILY Protein kinase-like (PK-like) 665 958 IPR011009 -
Seca1g03644 963 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 362 959 - -
Seca1g03644 963 CDD STKc_IRAK 693 961 - -
Seca1g03644 963 Pfam Leucine Rich Repeat 149 170 IPR001611 GO:0005515
Seca1g03644 963 PRINTS Leucine-rich repeat signature 510 523 - -
Seca1g03644 963 PRINTS Leucine-rich repeat signature 465 478 - -
Seca1g03644 963 ProSitePatterns Protein kinases ATP-binding region signature. 693 715 IPR017441 GO:0005524
Seca1g03644 963 Gene3D Phosphorylase Kinase; domain 1 650 762 - -
Seca1g03644 963 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 341 606 - -
Seca1g03644 963 Gene3D Ribonuclease Inhibitor 195 351 IPR032675 -
Seca1g03644 963 Gene3D Ribonuclease Inhibitor 1 181 IPR032675 -
Seca1g03644 963 Gene3D Transferase(Phosphotransferase) domain 1 763 963 - -
Seca1g03644 963 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 1 183 - -
Seca1g03644 963 Pfam Protein kinase domain 692 888 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g03644 963 ProSitePatterns Serine/Threonine protein kinases active-site signature. 807 819 IPR008271 GO:0004672|GO:0006468
Seca1g03644 963 SUPERFAMILY L domain-like 205 581 - -
Seca1g03644 963 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 651 762 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03644 Seca-Chr1 106134481 106138700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03644 1 962 Receptor kinase-like Gene Family AT3G02130 45.303 0.0 785
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Seca1g03644 Pkinase 8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03644 - - cam:101512699 1574.3