Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03641 ATGTCAAGTACTCTTGCAGCAATATTAGGAGGAGCTGCAGGAGCCGTGGCATTGGTAGGGATAGCTATAATACTTCTATGGTTCTGTCTTTCTCGCCAGAGGAGTGTTTCTAGGACTTCAGAGACTGGATCCTCTGATCCTTCCCAAGTGGGAAGACATGGTGCAATTGAATTGCCAATTCGAGATACTAGGCGTTTTGAGATGGAAGAACTTTCTTTGGCAACAAATAATTTCAGTGACAAAAATTTGATTGGACATGGGAAATTTGGGGAGGTTTACAAGGGTTTACTTCAAGATGGGATGCTTGTAGCCATCAAAAAGCGCCGTGGACTCCCTACTCAGGAATTTGTTGATGAGGTACGCTATCTCTCATCTATTCACCATCGGAATCTCGTGTCTCTCTTAGGCTACTGCCAGGAAAACAATCTACAGTTTCTTATATATGAATATGTGCCTAATGGAAGCGTCTGCACTCACTTGTATTCATTTTTGTATGCTGGTCGACAGAAGCTAGAATTCAAGCATAGACTTTCAATAGCTCAAGGTGCAGCTAAAGGTTTGGCTCATCTCCACTCTTTGAGTCCCCGTTTGGTGCATAAGAATTTCAAAACAGCTAATGTTCTTGTGGATGAAAACTTCATTGCTAAGGTCGCAGATGCAGGACTTCATAATTTCTTGGGGAGAAATGACATTGAGGGCTCATCTTCTCAATGTGTGCTACCAGATGAGATATTCCTTGCACCTGAGGTGAGAGAGTTCAGACAATTTTCTGAAAAGAGTGATGTATACAGCTTTGGTGTATTTTTGCTGGAATTGTTGAGTGGAAAGGAAGCAACATATACACCCTTTCCAGACACTGCGCTAGATCTGGTTGAATGGGTGCTAAGTAATCCAGTCCATGTCATTTTGTCCGACCTCATTGATGAAAGATTGGAGAGGAGTAGTTTCACAGATGAAGTAATGGAAGATTTCATCGTGCTGGGGATCAGATGTATAAATCCTTCAAGTGAAGGACGACCTGCCATGAGCTATGTGGAAATGGAACTTGATCGGATCATAGATAAAGAGATGAACTTGACAACAATTATGGGTGAAGGAACCCCAACTGTGACTCTTGGAAGTCAGTTATTCAAAGGAAATTCGACGGAAGAAGAAACTTCCGCCACGAGCCCAAATGTGTCTCGCGAATACGATATCGCCGTTCAGGCTCCTTCCTACAACGAGATTCGCTCCATGATTCAAGCTCCTCCAGAGGTCCACCACCTCGAGGACGAAAACGACGAGGACTCGCACCACCGCTATGTCCTTGATCAAGTTCTTCAACCTGACCCGAATAGCATCCGTGAAGTGCTCGCGAACGCTAAACCTAGCAGCACCCTCACGCGCCTCGTGTCGTCTTACTTTGACCACAGCGAAACCACCTCCCATCTCTGCCTCCTCCTCTGCCGCTCCGTCCACCGCGCACGCCACATCTATACGCCTCTCTCCGAACTCATCTCCGTTCTCCCCGCCGATTCCTCCTTCCTCTCTCAACCACAATGCGACCATGCCTATGACCTCTTCCTTCAATTCGACCAACACGAGAATCCGTTCATCTTTCCTCATTTTCATACTTTGCGCCACAGCTTCTCCGATCTCCGGCGAAACATCCAGCACGACCGCCGCAAATGCCGCTCTAGAATTCGCCTGCTTCGACACTCCACCGCCGGTTGTGCTGTTTGTCTCATCGCTACCACCACCGCTGCTGTGGTTTCTGCTGCGATAATCGCCGCACATGCTGCCGTTGGATTTGCCGCCATTGCTGCCGCGCCGTTTTGTATTCCGAAGAAAAGTGAGAGGAAGGAACGTGCGAGGTTGAAGCAGCTTGATGCGGCGGAGAATGGTACGTTTGTGGTGAATGATATTGAGACAATTGATAGTCTCCTTGATCGGCTTCAAACTGCGGTTGAAGGTGATAAGGCTCATGTTCGGTTTGCGTTGGAGAGGGGAAGGGATAGGCACCCTATACAGGAGGTGCTCAAGCAGCTACGAAAGACACAACCAATATTTGACCAGTTGCTTAAGGATCTTGAGCAACATATATTCCTCTGCTTCTACACTGTTAACAAAGCTAGAAATGCACTCCTCAGAGAGATAAGCCTTCATCAAACTTTGTAG 2157 0.4692 MSSTLAAILGGAAGAVALVGIAIILLWFCLSRQRSVSRTSETGSSDPSQVGRHGAIELPIRDTRRFEMEELSLATNNFSDKNLIGHGKFGEVYKGLLQDGMLVAIKKRRGLPTQEFVDEVRYLSSIHHRNLVSLLGYCQENNLQFLIYEYVPNGSVCTHLYSFLYAGRQKLEFKHRLSIAQGAAKGLAHLHSLSPRLVHKNFKTANVLVDENFIAKVADAGLHNFLGRNDIEGSSSQCVLPDEIFLAPEVREFRQFSEKSDVYSFGVFLLELLSGKEATYTPFPDTALDLVEWVLSNPVHVILSDLIDERLERSSFTDEVMEDFIVLGIRCINPSSEGRPAMSYVEMELDRIIDKEMNLTTIMGEGTPTVTLGSQLFKGNSTEEETSATSPNVSREYDIAVQAPSYNEIRSMIQAPPEVHHLEDENDEDSHHRYVLDQVLQPDPNSIREVLANAKPSSTLTRLVSSYFDHSETTSHLCLLLCRSVHRARHIYTPLSELISVLPADSSFLSQPQCDHAYDLFLQFDQHENPFIFPHFHTLRHSFSDLRRNIQHDRRKCRSRIRLLRHSTAGCAVCLIATTTAAVVSAAIIAAHAAVGFAAIAAAPFCIPKKSERKERARLKQLDAAENGTFVVNDIETIDSLLDRLQTAVEGDKAHVRFALERGRDRHPIQEVLKQLRKTQPIFDQLLKDLEQHIFLCFYTVNKARNALLREISLHQTL. 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03641 718 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
Seca1g03641 718 Pfam Protein of unknown function (DUF677) 452 712 IPR007749 -
Seca1g03641 718 Pfam Protein tyrosine and serine/threonine kinase 82 345 IPR001245 GO:0004672|GO:0006468
Seca1g03641 718 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 14 380 IPR047117 -
Seca1g03641 718 FunFam Protein kinase superfamily protein 151 366 - -
Seca1g03641 718 ProSiteProfiles Protein kinase domain profile. 78 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g03641 718 SUPERFAMILY Protein kinase-like (PK-like) 59 346 IPR011009 -
Seca1g03641 718 Gene3D Phosphorylase Kinase; domain 1 44 150 - -
Seca1g03641 718 Gene3D Transferase(Phosphotransferase) domain 1 153 365 - -
Seca1g03641 718 FunFam Protein kinase superfamily protein 43 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03641 Seca-Chr1 106002120 106009707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03641 5 398 Receptor kinase-like Gene Family AT3G46290 34.204 2.94e-53 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXa Seca1g03641 DUF677 2.6e-14 CL0133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03641 - - gmx:100305436 597.816