Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03601 ATGGCATTTGAAGTAAGAGATGGTGTTGGTGATTGGCTCTTAGAGTTTTTTAAAGATTGTGCTTCTACAAGTGAAATTGGTGGAAATACAATTTCTTTTCAAGAGACACAACAAGAACCATTGCCTCAAGCCAATTTCTTTTATGATGAAGTTCCTTATGAAGGGCAAATGTTTAATAGTTCTGATGAAGCTTATGAATTTTACCATGCTTTTGCACGAAAAAATGGTTTTTCGATTAGACGTGACCATACTTACAAATCTAGTAAGAATGAGTCTGAGGATAATCCTTTGGCTATTAATAAAAGAGAGTTTGTTTGTCATCGTGCTGGTTCTGCTAAACAACGCAAAGTTATTGAAGAGGAAAGTCAAAGAAAACGGAAAAGTTCAAGATATGATAAAGAGGTTCAATTTCTTCCGGCTTATCGAAACATCTCAATTGTTGATAAAGATCGTATACTATTATTGTCAAAAGCTGGTTGCCCTGTAAGCCTCATAATAAGAGTGCTTGAGCTAGAGAAAGGAATAGATCCGGAAAATCTACCATTTTTAGAGAAGGATATTAGGAATTTTAGTCAATCTCAGAGTGGTATTGGTAAAGAAAATGATACTTCAGATGTTCTCAAATTGTGCAAAAGTTTGAAAGATAGAGACGATGCCTTCCAATATGATTTCACCCGAGATGAAAATAACAAATTGGAGCATATTATTTGGGCATTTGGTGATTCAATTCGAGCATATGAGGCAAAAGATCGAGTTGAAGTCGCTACTGAAGAGTTAGGGAAAGTCATTCAAATCATAAAATCCATGCATGAGATTCAAGAAAAATCAACTGAGATGGAACATGATGTACCAAATCACAGTGGCTGTGAGGTTGAAGTTGAAAATCCCATCATTTCTAAAACAAAAGGTAGACCAAAAGGATCAAGGCCAAAAGGAGGAGTTGAAGTTGCAAAAAAGCCTCGTCATTGTCATTATCCTAATTGTGGTGGAACTAATCATGATTCGCGAAATTGTCCAAACAAAAAGAATAACATTGAGATATTGCCTTCTCAATCTCCTAATAAGTATGTGTTAGCCATATATGCGACACCCTTAGTTATACCGCTAAGAACATCACATTATAACACGTGA 1131 0.3554 MAFEVRDGVGDWLLEFFKDCASTSEIGGNTISFQETQQEPLPQANFFYDEVPYEGQMFNSSDEAYEFYHAFARKNGFSIRRDHTYKSSKNESEDNPLAINKREFVCHRAGSAKQRKVIEEESQRKRKSSRYDKEVQFLPAYRNISIVDKDRILLLSKAGCPVSLIIRVLELEKGIDPENLPFLEKDIRNFSQSQSGIGKENDTSDVLKLCKSLKDRDDAFQYDFTRDENNKLEHIIWAFGDSIRAYEAKDRVEVATEELGKVIQIIKSMHEIQEKSTEMEHDVPNHSGCEVEVENPIISKTKGRPKGSRPKGGVEVAKKPRHCHYPNCGGTNHDSRNCPNKKNNIEILPSQSPNKYVLAIYATPLVIPLRTSHYNT. 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03601 376 Pfam FAR1 DNA-binding domain 66 132 IPR004330 -
Seca1g03601 376 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 49 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03601 Seca-Chr1 104986082 104987594 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca1g03601 FAR1 1.7e-07 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03601 - - ccaj:109802755 406.371