Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03599 ATGAACACTTACACGACATCATCGAAGGGAAAGAAGAAGCAAACGGCGACAACGAGTGAAACAAAAACGACACAAGAACAGCAAACGACATGGGGAGGGAGGTACCTCGGTGTTAGAAGAAGACCATGGGGGAGATACGCTGCAGAGATTCGAGATCCTTCTACCAAAGAGAGGCACTGGCTCGGAACCTTCGACACTGCTGAAGAAGCAGCACTCGCATATGACAGAGCCGCACGCTCCATGCGTGGGTCACGTGCTCGAACCAACTTCGTCTATACCGACACTCCTCCTGGTTCCTCCGTCACCCCAATCATCTCCCCAGACCAACAACAACAACCCCAAACCTTTCACCATGTTCATGACCTCTCTTCACTCTTCCCAGCCGACCCGATTTCTCTCCAACCCGACCCGATTCCGCCTCTCGACCCGGTTTCCCTCTTGGCGGGAATGCCGTCCGGTTTTTACGCTTACGGTTACGGTGAGGAGAGAAATAATAATACTCTCCCCGCTGCTGTCACCCTGGAAAGTCAACATCAAGTGTTTTTCGAGGATAGTAGTAGTAGTAGTACGGGTAACTGTAACACTAGCACTAACTCCATAGAGCTTCCACCGTTACCACCAGATATTACTAGCTCCACGTGTTATTATGATAATAACAATGACGGTTATTATTATTGGGAGCAGAATGCGGGAGATTGTTACTTGAATAGTTCGATGTTCACCACATTGCCAACGGTTTCAGAGAATGTGGCGGGTTCTGAAGGTTTTGATTTCGGGAGCTCCTCGTTTTTCTTTTGA 798 0.49 MNTYTTSSKGKKKQTATTSETKTTQEQQTTWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGSRARTNFVYTDTPPGSSVTPIISPDQQQQPQTFHHVHDLSSLFPADPISLQPDPIPPLDPVSLLAGMPSGFYAYGYGEERNNNTLPAAVTLESQHQVFFEDSSSSSTGNCNTSTNSIELPPLPPDITSSTCYYDNNNDGYYYWEQNAGDCYLNSSMFTTLPTVSENVAGSEGFDFGSSSFFF. 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03599 265 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 14 164 - -
Seca1g03599 265 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
Seca1g03599 265 MobiDBLite consensus disorder prediction 1 31 - -
Seca1g03599 265 Gene3D AP2/ERF domain 33 92 IPR036955 GO:0003700|GO:0006355
Seca1g03599 265 SUPERFAMILY DNA-binding domain 34 91 IPR016177 GO:0003677
Seca1g03599 265 SMART rav1_2 34 97 IPR001471 GO:0003700|GO:0006355
Seca1g03599 265 FunFam Ethylene-responsive transcription factor 2 34 92 - -
Seca1g03599 265 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Seca1g03599 265 PRINTS Ethylene responsive element binding protein signature 57 73 IPR001471 GO:0003700|GO:0006355
Seca1g03599 265 CDD AP2 34 90 IPR001471 GO:0003700|GO:0006355
Seca1g03599 265 Pfam AP2 domain 35 83 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03599 Seca-Chr1 104683711 104684508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03599 17 260 AP2-EREBP Transcription Factor Family AT5G13910 43.083 1.59e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca1g03599 AP2 1.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03599 K09286 - gmx:100792421 207.608