Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03595 ATGAGTTTTCAAGATATCCAAAACCCTCCCACTCGCCGAAACCAGTCACCGTCGCAGGCCGTCGCTGCCGGAATTTTCCAGATCAACACCTCCGTCGCTACTTTCCGGCGACTCGTCGATGCCATTGGAACCGTTAAAGACACTCAGGAGCATCGTCAGAAACTGCATAATACGAGGCAGAGGATATTGCAGCAGGTGAAGGATACTTCTGCTAAGCTCAAATCATTGTCTGAATCTGATCGTGATGCTACTGCCAATGCTAATAAGAAAATTGAAGATGCTAAGCTAGCAAGAGATTTTCAAACCACATTGCAAGAATTCCAGAAAGTACAACAGCTTGCTTCTGAGCGCGAATCAACTTACACTCCTGCTGCTCCTTCTACTTCTTTACCAACAAGCTCTGGCTCCGGTGAAGAATCTGTTGACATAGACCGGGAAAGCCAGCCTTTTATCAGAGAGCAGAAGAGGCAAGAGATACTTCTATTGGACAATGAAATATCCTTCAATGAGGCCATGATTGATGAAAGAGAACAGGCTATTAGAGAGGTACAAGACCAAATTGGACAAGCAAATGAAATATTCAAGGATCTAGCTGTTCTGGTTCATAATCAGGGAGTTGTTATTGGTAAATAA 633 0.4408 MSFQDIQNPPTRRNQSPSQAVAAGIFQINTSVATFRRLVDAIGTVKDTQEHRQKLHNTRQRILQQVKDTSAKLKSLSESDRDATANANKKIEDAKLARDFQTTLQEFQKVQQLASERESTYTPAAPSTSLPTSSGSGEESVDIDRESQPFIREQKRQEILLLDNEISFNEAMIDEREQAIREVQDQIGQANEIFKDLAVLVHNQGVVIGK. 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03595 210 Gene3D - 171 210 - -
Seca1g03595 210 PANTHER SYNTAXIN 16 208 IPR045242 -
Seca1g03595 210 SMART SynN_4 5 119 IPR006011 GO:0016020
Seca1g03595 210 Pfam Syntaxin-like protein 22 121 IPR006011 GO:0016020
Seca1g03595 210 SUPERFAMILY t-snare proteins 15 205 IPR010989 GO:0016020|GO:0016192
Seca1g03595 210 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 170 210 IPR000727 -
Seca1g03595 210 MobiDBLite consensus disorder prediction 112 138 - -
Seca1g03595 210 MobiDBLite consensus disorder prediction 112 143 - -
Seca1g03595 210 Coils Coil 173 193 - -
Seca1g03595 210 Gene3D - 9 127 - -
Seca1g03595 210 FunFam Syntaxin-22 like 12 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03595 Seca-Chr1 104218090 104221525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03595 1 208 SNARE and Associated Proteins AT5G46860 59.070 5.27e-81 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03595 - - gmx:100787141 336.65