Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03579 ATGGCTGATGGTCATGAATCAGACAAGAACATTGAGATATGGAAGATAAAAAAATTGATAAAAGCTCTTGAAGCTGCAAGAGGTAATGGTACCAGCATGATTTCTCTGATCATGCCTCCTCGTGATCAAATATCTCGTGTCACTAAGATGTTGGGAGATGAATTTGGAACTGCTTCAAATATCAAAAGTAGGGTGAACCGGCAATCAGTGTTAGGAGCCATTACTTCTGCTCAGCAGAGGTTGAAACTATATAACAAGGTTCCTCCAAATGGTTTGGTTCTTTATACTGGTACCATTGTCACTGAAGATGGCAAGGAAAAGAAGGTGACAATTGATTTTGAACCTTTCAAGCCTATCAATGCCTCACTTTACCTATGTGATAACAAGTTTCATACAGAAGCTCTAAATGAACTTTTAGAATCTGATGACAAGTTCGGTTTTATTGTTATGGATGGAAATGGCACCCTTTTCGGGACTTTAAGTGGAAATACTCGTGAGGTGCTTCATAAATTTACTGTAGATCTACCAAAGAAACACGGTAGAGGAGGGCAGTCAGCTTTGCGTTTTGCTCGTCTTCGTATGGAAAAAAGACACAATTATGTTAGGAAGACAGCAGAACTTGCCACTCAGTTTTTCATCAACCCTGCTACTAGTCAACCTAATGTTGCTGGACTTATACTTGCTGGTTCAGCTGACTTCAAGACTGAGCTGAGCCAGTCAGATATGTTTGATCCTCGTTTGCAAGCGAAAATATTGAATGTGGTCGATGTTTCCTATGGTGGGGAAAATGGCTTCAATCAAGCTATTGAGTTGTCTGCAGAGATTTTATCTAATGTGAAGTTCATTCAAGAGAAACGCTTGATTGGAAAATACTTTGAAGAGATTAGCCAAGATACTGGGAAATATGTCTTTGGGGTTGATGACACATTAAAGGCACTGGAGATGGGTGCAGTGGAAACACTTATTGTATGGGAAAATTTGGATATCAATAGGTATGTACTGAAGAACAGCACCACTGGTGAGGTTGTCATAAAGCACTTGAACAAGGAACAAGAGGCTGATCAAAGCAACTTCAGAGACCCAGCCACATCTGCAGAATTGGAGGTTCAGGAGAAGATGCCCTTGCTTGAGTGGTTTGCCAACGAGTACAAACGATTTGGATGCTCGCTGGAATTTGTGACCAACAAATCTCAAGAAGGATCACAATTTTGCAGAGGCTTTGGTGGTATTGGGGGTATCCTTCGCTACCAGCTTGACATCAGATCATTTGATGAGTTATCTGATGGTGAGGAAGTGTATGAGGATTCTGATTAA 1314 0.4079 MADGHESDKNIEIWKIKKLIKALEAARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVAGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALEMGAVETLIVWENLDINRYVLKNSTTGEVVIKHLNKEQEADQSNFRDPATSAELEVQEKMPLLEWFANEYKRFGCSLEFVTNKSQEGSQFCRGFGGIGGILRYQLDIRSFDELSDGEEVYEDSD. 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03579 437 Pfam eRF1 domain 1 18 138 IPR005140 -
Seca1g03579 437 Gene3D eRF1 domain 2 136 277 IPR042226 -
Seca1g03579 437 FunFam Eukaryotic peptide chain release factor subunit 1 136 277 - -
Seca1g03579 437 SMART eRF1_1_2 5 140 IPR005140 -
Seca1g03579 437 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 5 428 IPR004403 GO:0003747|GO:0006415
Seca1g03579 437 SUPERFAMILY N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 6 140 IPR024049 -
Seca1g03579 437 Pfam eRF1 domain 2 144 277 IPR005141 -
Seca1g03579 437 Gene3D - 279 437 IPR029064 -
Seca1g03579 437 FunFam Eukaryotic peptide chain release factor subunit 1 2 135 - -
Seca1g03579 437 Pfam eRF1 domain 3 281 418 IPR005142 -
Seca1g03579 437 FunFam Peptide chain release factor subunit 1 279 437 - -
Seca1g03579 437 NCBIfam peptide chain release factor aRF-1 12 417 IPR004403 GO:0003747|GO:0006415
Seca1g03579 437 Gene3D eRF1 domain 1 2 135 IPR024049 -
Seca1g03579 437 SUPERFAMILY L30e-like 278 420 IPR029064 -
Seca1g03579 437 SUPERFAMILY Translational machinery components 142 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03579 Seca-Chr1 103735808 103739336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03579 1 437 Eukaryotic Initiation Factors Gene Family AT3G26618 92.449 0.0 835
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03579 K03265 - tcc:18601188 835.099