Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03567 ATGAAGTTCAATCCAAGGGTTTCAAGCAGCCGGCGCAAGAGCCGCAAGGCGCATTTCACGGCGTTGTCGAGCGTGTGTCGCGTGCTGATGAGTGCGCCACTCTCCACCGACCTCTGATCGAAGTATAACGTGCTGTTAGTACCGGTTCGGAAGGACGACGAGGTGCAGGTAGTGAGGGGAAACCTACAAGGGCTACGAAGGAAAGGTGGTGCAGGTAGTGAGGGGAAACCTCCACTCTTCTGTTATTATTTTCCTGGTTGA 261 0.5402 MKFNPRVSSSRRKSRKAHFTALSSVCRVLMSAPLSTDL.SKYNVLLVPVRKDDEVQVVRGNLQGLRRKGGAGSEGKPPLFCYYFPG. 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03567 85 PANTHER 60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER 1 65 IPR005756 GO:0003735|GO:0006412|GO:0015934
Seca1g03567 85 SUPERFAMILY Translation proteins SH3-like domain 8 64 IPR008991 -
Seca1g03567 85 Gene3D - 1 75 IPR014722 -
Seca1g03567 85 Pfam Ribosomal proteins L26 eukaryotic, L24P archaeal 8 63 IPR005756 GO:0003735|GO:0006412|GO:0015934
Seca1g03567 85 NCBIfam 50S ribosomal protein L24 8 64 IPR005756 GO:0003735|GO:0006412|GO:0015934
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03567 Seca-Chr1 103221222 103221482 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03567 1 63 Cytoplasmic Ribosomal Protein Gene Family AT5G67510 76.562 9.01e-28 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03567 K02898 - gmx:100819391 90.5077