Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03559 ATGGTCGGTGCTATAAAAGCAGCAATTGGAGATGCAGTGTTAACTTTCATGTGGGTGTTCTGCTCTTCCACGCTGGGAATAGCTTCACGCACCATAACCAAAGCCCTTGACCTTCAGAACCTCTCATACAACGGTTTCCCTTACCCTTCATTTCTTATCACGACCACCCTCGTCTTCCTCCTCGTTTTCGTCTTCAGCTTCATCGGCAACGCCTTGGGTGGTGCCAGTTTCAACCCCACCGGCACCGCTTCCTTTTACGCCGTTGGTCTCGGTTCCGACACTCTCTTCTCAATGGCTCTCCGTTTCCCTGCCCAGGCGCTTGGTGCTGCAGGGGGTGCAATTGCAATTATGGAGGTGATTCCTTCGAAATACAAGCACATGATGGGGGGGCCTTCTTTGAAAGTGGACTTGCATACTGGGGCTGTTGCTGAAGGGTTGTTGACATTTGTGATTTCTTTTGCTGTCCTCTTAATATTCCTAAAGGGACCTCGTAGTGATTTGATGAAGATTTGGTTGCTGGCATTGTCAACCGTTACTTTGGTCATGGTTGGATCAACCTACACAGGGCCATCCATGAATCCTGCCAATGTGAGTTACTACTTTCTTGCGTTTATCAATTCTTTCTTTTTCTTGTATGAAATTGTTTGCTACTTGCATCAGTCCAGGTTCTGCATCCTCTCCTCTTACGGTTCTGTTATGCATGACTTTTTTCCCTTGGTTGTGCAAGCTGCTTTTCAAATTGAGGCTGCTAGTTTATTTGACCCACTAGACCAAGCTGCTGTTTTTGCAAGTTCCAGGTTGTTGGTTTGTGCAATTCAGGCTACTGAATTAGAGCATGGGTTTGAAGTCTGCCATCCATTTTACACTAAAGATCTAAATGGATTCACTGTTGTTGATAGCACTAACAAGTATCAAGCCTTTGGTTGGGCATACTTAAACAACCGGCACAACACATGGGACCAATTCTATGTATATTGGATTTGCCCCTTCACTGGAGCAATATTGGCTGCTTGGCTATTCCGTGCTATCTTTCCCCCACCACCACCAGTATTAGTTGAGAATCCCCAAGACATAGAGCTGGAGCCGCTACAAGATCCCAAGCAATTGAAGGCTCCGCCCGCCGCCGCCGCCTCCGTCAACGGTCAGATCCGTTACCGATCGCCGTCCTCCGCCGAGCTCTTTGACGGCTCTAGCAGCAACTCTCCGCCGTCTCACGCTGCCGATCAGCACTCGCCGGAGTTCGAGTCGAGCAAAATGCTGAAGCGCCCCAGCCGCCAAGAGTCCCTCTCTGACAAGATCTACAGGTTCCGAGGGACTCTGCTTGTGATCTCGATCCCGCTCCTTCTCATCACCTTCGTACTCTATGTGATGCCGTCGAGCTCCTCCAACGAGTCTGCCGGAGACTACGCCCTCGTTAATCGGAAAATGTCACCCGATAGAAAATCTGCTGGCTCATACGCCGTCATCTTCGACGCCGGAAGCTCCGGCAGCCGCGTCCACGTCTTCCATTTCGACCAGAACCTGGATCTTGTTCACATTGGCAAAGATCTCGAACTTTTCGTGCAGATTAAACCGGGTTTGAGTGCATACGCTCAGAATCCTCAACAGGCAGCGGAATCTTTGGTTTCGCTTTTGGATAAAGCGGAGGGTGTTGTTCCTCGGGAAATGCGATCCAAGACACCCGTTCGAGTTGGGGCAACTGCGGGTTTGAGAGCTTTGGAAGGGGATGCATCTGATAGGATCTTGCAAGCGGTAAGGGATTTGCTCAAGGAAAGAAGCTCATTGAAATCTGAGTCTGATGCGGTTACGGTGCTGGATGGGACACAAGAAGGTGCTTATCAATGGGTTACTATTAACTATCTTTTGGGAAACTTGGGAAAAGATTATTCGAAAACAGTTGGGGTAGTTGATCTTGGAGGTGGGTCTGTTCAAATGGCCTATGCCATCTCAGAGACTGAGGCTGCCATGGCTCCAAAAGCAACAGATGGAGATGACCCATATGTCAAGGAGATGTTCCTGAGGGGAAGGAAATATTACCTCTATGTTCACAGTCTTTTTCATGATAGTATTCAGTGTTCACTTGGATATTCTGTAATACCATTTTCCATGTCTAATATATTTTTACATCTTGCTTTCAGTTACTTGCATTATGGTTTACTAGCTGCTCGTGCAGAAATTTTAAAGGTTTCTGATGATGCTGACAACCCTTGTATCTTATCTGGCTATGATGGATCTTACAAGTATGGAGGAAAGTCATTTAGGGCTACATCCTCCCCGTCTGGGTCAAGCTTAAATGAATGCAAAAGCATTGCTCACAAGGCTCTCAAAGTTAATGAGTCAACATGTACACATATGAAGTGCACTTTTGGTGGGATATGGAATGGTGGAGGTGGGGATGGGCAGAAAAACCTTTTTGTTGCCTCGTTTTTCTTTGACCGGGCTGCTGAGGCTGGTTTTGCTGATCCAAACTCACCAGTTGCAATAGTTCGTCCTGCGGATTTTGAGGATGCAGCTAAGCAAGCTTGTCAAACAAAACTTGAGAATGCCAAATCCACTTTTTCAAAAATTGAAGAAGGGAACCTTCCGTATATTTGCATGGATCTTGTGTACCAATATACATTGCTTGTTGATGGGTTTGGCATATATCCATGGCAAGAGATTACATTGGTGAAGAAAGTTAAATACGATGATGCTCTTGTCGAGGCAGCATGGCCCCTAGGCAGCGCCATCGAAGCTGTATCTGCTGTGTAA 2751 0.4707 MVGAIKAAIGDAVLTFMWVFCSSTLGIASRTITKALDLQNLSYNGFPYPSFLITTTLVFLLVFVFSFIGNALGGASFNPTGTASFYAVGLGSDTLFSMALRFPAQALGAAGGAIAIMEVIPSKYKHMMGGPSLKVDLHTGAVAEGLLTFVISFAVLLIFLKGPRSDLMKIWLLALSTVTLVMVGSTYTGPSMNPANVSYYFLAFINSFFFLYEIVCYLHQSRFCILSSYGSVMHDFFPLVVQAAFQIEAASLFDPLDQAAVFASSRLLVCAIQATELEHGFEVCHPFYTKDLNGFTVVDSTNKYQAFGWAYLNNRHNTWDQFYVYWICPFTGAILAAWLFRAIFPPPPPVLVENPQDIELEPLQDPKQLKAPPAAAASVNGQIRYRSPSSAELFDGSSSNSPPSHAADQHSPEFESSKMLKRPSRQESLSDKIYRFRGTLLVISIPLLLITFVLYVMPSSSSNESAGDYALVNRKMSPDRKSAGSYAVIFDAGSSGSRVHVFHFDQNLDLVHIGKDLELFVQIKPGLSAYAQNPQQAAESLVSLLDKAEGVVPREMRSKTPVRVGATAGLRALEGDASDRILQAVRDLLKERSSLKSESDAVTVLDGTQEGAYQWVTINYLLGNLGKDYSKTVGVVDLGGGSVQMAYAISETEAAMAPKATDGDDPYVKEMFLRGRKYYLYVHSLFHDSIQCSLGYSVIPFSMSNIFLHLAFSYLHYGLLAARAEILKVSDDADNPCILSGYDGSYKYGGKSFRATSSPSGSSLNECKSIAHKALKVNESTCTHMKCTFGGIWNGGGGDGQKNLFVASFFFDRAAEAGFADPNSPVAIVRPADFEDAAKQACQTKLENAKSTFSKIEEGNLPYICMDLVYQYTLLVDGFGIYPWQEITLVKKVKYDDALVEAAWPLGSAIEAVSAV. 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03559 916 SUPERFAMILY Aquaporin-like 4 197 IPR023271 -
Seca1g03559 916 Gene3D - 486 605 - -
Seca1g03559 916 Gene3D - 895 910 - -
Seca1g03559 916 Gene3D Glycerol uptake facilitator protein. 3 243 IPR023271 -
Seca1g03559 916 Gene3D Glycerol uptake facilitator protein. 287 348 IPR023271 -
Seca1g03559 916 MobiDBLite consensus disorder prediction 390 423 - -
Seca1g03559 916 Gene3D Exopolyphosphatase. Domain 2 712 894 - -
Seca1g03559 916 Gene3D Exopolyphosphatase. Domain 2 606 685 - -
Seca1g03559 916 SUPERFAMILY Aquaporin-like 302 355 IPR023271 -
Seca1g03559 916 PRINTS Major intrinsic protein family signature 58 82 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca1g03559 916 PRINTS Major intrinsic protein family signature 174 196 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca1g03559 916 PRINTS Major intrinsic protein family signature 97 116 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca1g03559 916 PRINTS Major intrinsic protein family signature 6 25 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca1g03559 916 PRINTS Major intrinsic protein family signature 143 161 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca1g03559 916 MobiDBLite consensus disorder prediction 390 407 - -
Seca1g03559 916 Pfam GDA1/CD39 (nucleoside phosphatase) family 484 684 IPR000407 GO:0016787
Seca1g03559 916 Pfam GDA1/CD39 (nucleoside phosphatase) family 711 914 IPR000407 GO:0016787
Seca1g03559 916 CDD NBD_sugar-kinase_HSP70_actin 488 647 - -
Seca1g03559 916 ProSitePatterns GDA1/CD39 family of nucleoside phosphatases signature. 605 620 IPR000407 GO:0016787
Seca1g03559 916 PANTHER ADENOSINE/GUANOSINE DIPHOSPHATASE 429 686 IPR000407 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03559 Seca-Chr1 102722992 102743747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03559 425 915 Calmodulin-binding Proteins AT3G04080 66.395 0.0 630
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03559 K14641 - gmx:100786073 830.476