Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03529 ATGCTTTGCTCCAAGTTTCAGTCTTTATCCTCACCAAACCCTCAACATTTTGCTAGTAACCACCACATGGCTACCCCAGAGTCCAATTTGCCACCAGGTTTTAGGTTCCACCCAACTGATGAGGAGCTCATTCTTCACTACCTCAGAAAAAAAATTGCCTCCATACCCTTACCAGTTTCCATCATTGCTGAGGTTGATATCTACAAGCTTGATCCATGGGAATTACCAGCAAAGGCTACATTTGGGGAGAAAGAATGGTATTTTTTCAGTCCTAGAGACAGGAAATACCCCAATGGTGCAAGGCCAAACAGAGCAGCTGCTTCAGGGTATTGGAAGGCCACTGGCACAGATAAGACCATAGTGACATCATTGCCAAGAGGAGGGGCCAAAGAGCACATTGGTGTGAAGAAGGCTTTGGTATTTTACAAAGGAAAACCCCCAAAAGGTGTCAAGACTAATTGGATCATGCATGAATATCGCCTTGTAGACAACAACAAACCCATTAAGCTCAAAGATTCCTCCATGAGATTGGATGATTGGGTACTGTGCCGGATTTACAAAAAGTCCAAATACACTCTACCTTCAACAGAGGCAGTTACAGGGGTAGGTGAGGTAGAAGAACACCAATTCAAAGATACCCTTTTGCCAATCTCAAAATCCCCAACACCTCCTCCTCAGAACACACTGATATCTCAGAAATCTGTGTCCTTTTCCAACCTATTGGATGCCATGGACTATTCCATGCTGAGTAGCTTCTTATCTGAGAACCATTCCAACACACCAGGGATTGGGATTGGATCAAGTGCAGGATTCAACAGTGGAATCAATTTTGATCAGCAACCTTCTCAAATTAACACCAACAATTTTCACATTTTTCAGAAGAATCCCCAATTGAACCCTTCAGTCACCAACATGGAAAACATTAGGCCAAAGCGCCAGCTTTCAAATATGGATCATGAGGACACTTTGTACCCATCAAAGAAATACATGAGTTCTTCTTGCAACTTCCCAACTAACATCAATGCCCAATTTGAGAACCCACAATGGAACTACCTTATGAAGCAGTCTTTGTTGAATCAGCAGTTACTCCTGGGTCCTCATCTTCAATTTCAAGGATAA 1119 0.4281 MLCSKFQSLSSPNPQHFASNHHMATPESNLPPGFRFHPTDEELILHYLRKKIASIPLPVSIIAEVDIYKLDPWELPAKATFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKTIVTSLPRGGAKEHIGVKKALVFYKGKPPKGVKTNWIMHEYRLVDNNKPIKLKDSSMRLDDWVLCRIYKKSKYTLPSTEAVTGVGEVEEHQFKDTLLPISKSPTPPPQNTLISQKSVSFSNLLDAMDYSMLSSFLSENHSNTPGIGIGSSAGFNSGINFDQQPSQINTNNFHIFQKNPQLNPSVTNMENIRPKRQLSNMDHEDTLYPSKKYMSSSCNFPTNINAQFENPQWNYLMKQSLLNQQLLLGPHLQFQG. 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03529 372 ProSiteProfiles NAC domain profile. 30 188 IPR003441 GO:0003677|GO:0006355
Seca1g03529 372 FunFam NAC transcription factor 56 39 193 - -
Seca1g03529 372 Pfam No apical meristem (NAM) protein 31 161 IPR003441 GO:0003677|GO:0006355
Seca1g03529 372 Gene3D NAC domain 39 192 IPR036093 GO:0003677|GO:0006355
Seca1g03529 372 PANTHER NAC TRANSCRIPTION FACTOR 56 30 211 - -
Seca1g03529 372 MobiDBLite consensus disorder prediction 1 24 - -
Seca1g03529 372 SUPERFAMILY NAC domain 17 188 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03529 Seca-Chr1 101460286 101461657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03529 26 372 NAC Transcription Factor Family AT3G04070 53.203 5.06e-110 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca1g03529 NAM 2.7e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03529 - - gmx:100301906 597.43