Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03516 ATGCTGGCATCCCAAGCTCAACGTCAACTAAATGGGTTGAGATTTCTAGGTAAAGTCTTGTCAGCTGAAAGAGCTCGTAACCCAAATGAGAGTGGTGAAAAGAGTAGTGGAGCTCAGCTGGGAAAGGACTCTAAAACATCTGTGGTGAAGAATGCAGATGTGAACAAACCTATTGATGGAGATACAAAATCTGGAGGCCTCCCTATTCCTGAGCCAATTGCTGATAGACTTGGTGTTGATTATCCATTTCCTCCTCATCTTGAGTATGCTTACCCTCCACCTGATGGAAATATACTGACCAACATTGTGAATGCTCTAATTGCTGTTCCCCGCTTTTACACTCAGGTTTTACACTTGATGAACAAAATGAACATTCCAGCTCCATTTCGTATGGCACTGCCCACGCCCCCATTACCTCCAGAGGTACCAGCCCCACCACCGCCTCTGCCTCCACCTCCCCCTTCTGTAACTGTGAAGCCTCGATCTGCAGATCTGTCTAGTGATGAATCAGAGATGGAGTCTTCAGATGAGGAGGGTGGACCAAGAACAGAAAGGGCTGGACGAAAGCGTGCCAAACGTGAGACCATTGTTGGCCCTGCCGTGGATAAAGATGTGGCTCATGAGTCTGTGGGAGTAAAACCAGCCACATTGGTCCCAAAAGAAATCCCAGTGATAAAAAGGAACCCCGTCTTAAAGATAAAAATTGCTCCAAAAGCAACCCAGAATGAACATAAGGATGATGACACAAGAGAAGAGTTACAAGAGCCAGAAAAAGATATTCCAGATCCTAACAAATTTCTGACTCCTGATGAATTAGAGAAAGGAAAGTTGCCTCCGGAGGAAATCTTATCTCTTCCAATGTTTAAGAACTATACACCTGGAAATCCTGCTTCTGTGTTGTATATTAAGAATTTGGCAAAAGATGTGATTGCTGATGATTTCTATTTTATATTTGGGTCCTTCTTTGGAAGTATTGAGGCTGCTAAGTCTGGTCTTCAAATCAAACTGATGCAGGAAGGAAGGATGAGAGGTCAAGCATTTGTAACATTCCCCTCCAATGAACTGGCTCATCAAGCTCTGAATCTAGTGAATGGATATGTATTCAAAGGCAAGCCAATGATCATCCAGTTTGGTCGGAATCCTGCTGCTGCAAAGGGAACTTAA 1164 0.4399 MLASQAQRQLNGLRFLGKVLSAERARNPNESGEKSSGAQLGKDSKTSVVKNADVNKPIDGDTKSGGLPIPEPIADRLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRMALPTPPLPPEVPAPPPPLPPPPPSVTVKPRSADLSSDESEMESSDEEGGPRTERAGRKRAKRETIVGPAVDKDVAHESVGVKPATLVPKEIPVIKRNPVLKIKIAPKATQNEHKDDDTREELQEPEKDIPDPNKFLTPDELEKGKLPPEEILSLPMFKNYTPGNPASVLYIKNLAKDVIADDFYFIFGSFFGSIEAAKSGLQIKLMQEGRMRGQAFVTFPSNELAHQALNLVNGYVFKGKPMIIQFGRNPAAAKGT. 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03516 387 Gene3D - 293 386 IPR012677 -
Seca1g03516 387 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 298 380 IPR000504 GO:0003723
Seca1g03516 387 SMART rrm1_1 299 376 IPR000504 GO:0003723
Seca1g03516 387 MobiDBLite consensus disorder prediction 31 51 - -
Seca1g03516 387 MobiDBLite consensus disorder prediction 238 272 - -
Seca1g03516 387 MobiDBLite consensus disorder prediction 22 68 - -
Seca1g03516 387 FunFam U11/U12 small nuclear ribonucleoprotein 65 kDa protein 293 387 - -
Seca1g03516 387 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 300 372 IPR000504 GO:0003723
Seca1g03516 387 PANTHER UNCHARACTERIZED 2 383 IPR045164 -
Seca1g03516 387 MobiDBLite consensus disorder prediction 138 158 - -
Seca1g03516 387 SUPERFAMILY RNA-binding domain, RBD 276 381 IPR035979 GO:0003676
Seca1g03516 387 MobiDBLite consensus disorder prediction 138 202 - -
Seca1g03516 387 MobiDBLite consensus disorder prediction 236 272 - -
Seca1g03516 387 MobiDBLite consensus disorder prediction 176 202 - -
Seca1g03516 387 CDD RRM2_RBM40_like 298 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03516 Seca-Chr1 101005524 101011290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03516 293 376 Eukaryotic Initiation Factors Gene Family AT3G16380 33.333 4.57e-07 50.1