Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03504 ATGAACATGGATATGTGCCAAAATGTATCAGTTTCCGGCCACCAAGACCACTCAAAGCTTCCTACCTTCTCAAGCAGCCTTGATGACCTCTTCTCTGCTCAGAACACTGAAGTGGATGATGGCTTGGAATGGCTTTCAGTATATGTTGAAGACTGCTTTTCTAGCCCCCCAAGTTGTGTGTTTGTACCTTCTGGTGTTCAGACCACAAGCACAAACTCCAAACCTTCAGACACACTTCAGAGACCAAGGGAAAATGAGTCTCCTTTTGCAGTTCCTGGGAAGGCAAGGAGCAAAAGGAAAAGACTTTCAGCTCCTAGAACCAAAGACCCTTTAAGCATCTGGTCAAACCACTTGAACCCTCAAAATGATGCCTTTAATTCTGACCCTCCTCTCCTAAAACAGGCTTATTGGTTGGCTGATAGTGAACTCATTGTCCCTAAACAGAAGGATGAGCAAGAGGGAGCCAAAGATGAAGAAGTGGTGAAGAAAGGGATTGTTGTGAGCAAGGAAAGCTTTGGGGACTCTGAGACTGAGGTTAGCAATGGTGGACAGCATCCAATGCCAAGGAGGTGCACCCATTGCTTGGCACAAAGGACCCCACAATGGAGGGCAGGACCATTGGGTCCAAAGACACTATGCAATGCTTGTGGAGTGAGGTACAAGTCTGGTAGGTTGCTACCAGAGTATAGACCAGCCAAGAGTCCTACTTTTGTTAGCTACTTGCATTCAAATTCCCACAAGAAAGTCATGGAGATGAGGATGTCTCTTCTATCTTCTATTCCTAATGAGCAGTAG 795 0.4604 MNMDMCQNVSVSGHQDHSKLPTFSSSLDDLFSAQNTEVDDGLEWLSVYVEDCFSSPPSCVFVPSGVQTTSTNSKPSDTLQRPRENESPFAVPGKARSKRKRLSAPRTKDPLSIWSNHLNPQNDAFNSDPPLLKQAYWLADSELIVPKQKDEQEGAKDEEVVKKGIVVSKESFGDSETEVSNGGQHPMPRRCTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMSLLSSIPNEQ. 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03504 264 ProSiteProfiles GATA-type zinc finger domain profile. 185 221 IPR000679 GO:0006355|GO:0043565
Seca1g03504 264 SMART GATA_3 185 239 IPR000679 GO:0006355|GO:0043565
Seca1g03504 264 Pfam GATA zinc finger 191 225 IPR000679 GO:0006355|GO:0043565
Seca1g03504 264 Gene3D - 181 252 IPR013088 GO:0006355|GO:0008270
Seca1g03504 264 MobiDBLite consensus disorder prediction 63 78 - -
Seca1g03504 264 FunFam GATA transcription factor 181 262 - -
Seca1g03504 264 CDD ZnF_GATA 190 237 IPR000679 GO:0006355|GO:0043565
Seca1g03504 264 MobiDBLite consensus disorder prediction 63 115 - -
Seca1g03504 264 ProSitePatterns GATA-type zinc finger domain. 191 216 IPR000679 GO:0006355|GO:0043565
Seca1g03504 264 PANTHER GATA TRANSCRIPTION FACTOR 22 257 - -
Seca1g03504 264 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 186 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03504 Seca-Chr1 100504008 100505149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03504 18 253 C2C2-Gata Transcription Factor Family AT4G32890 39.431 8.63e-43 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Seca1g03504 GATA 1.1e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03504 - - gmx:100786479 391.734