Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03495 ATGGAAAACATTAATGAAAACGTTGGTGAGAATGTTGTTGGGTTGGAAGAAATTGAAAGTGAAAATGATGGTGACAATGCATTTCATTACGACTCTCGTCAATTTGTAATTGGGGTGGATTCTGAGGATGATTTTGTTGACCTTAATCCTGACTTGTTATCTGAGGAAAACCTGAAGAATTTTAATTTTCCTAATCTGGATGTTGCTTATAATTTTTACAATAATTGGTATGGAAAAATGAAGGGTTTTTCAGCACGAAAGGGCAAAGAACGTAAAAATGCAATGGAAGAAATTATTGAGAAAACCTATCTATGCCATAGGGAAGGAAAGAGACCAATTAATACGAATGAAAAGATGGGGAAGAAAAAACGTGAAGCAAAGCCTGAGACAAGGTGTTTATGTCCTGCAAAAATGAAGGTTCGGTTAGATGTACATTCTGGCCATTGGAATGTGATCAAGTTTTGTGATGCCCATAATCATGAAATGCTAAACCCCAAATACTCAGGGATGCTACCGGCTCATAGGAAATTGAGTGAAGCTGATATCTTGGAGATGAATAACATGCGGAATGCATGTATTACCACACCTCAAATTTATGGGTCATTTGCCAGCCAATCTGGTGGGTACAACAATGTTGGTTTTCGGAAAAGAGATCTTTACAATGAGATTGGTAGGCAAAGAATGTTGCAGCTAAGTGATGCTAAGGGTGCAATTAAGTACCTACGTGAAAGGGAGCAGAATGAAGGGTCAATGTTTTGGAGGCACACGACTGACTCTGAAGGCCGACTCCAGCGATTATTTTGGTGTGACGGTCAGTGCAAAGTTGATTACAAATTATTTGGTGATGTCCTTGCCTTTGATGCCACATACCGTAAGAACAAATATCATTTTCCTTTGGTTGTGTTTTCGGACATAAATCACCATAATCAAAGTACAATATTTGCTAGTTACCTAGTTGCAGATGAAACTGAGGAAACTTATGTGTGGGTTTTGGAACAGTTTATGGTGGCAATGAAAGGCAAGATGCCTTCAGCAGTGATAATAGATGGTGATCTTGCTATGCGGAATTCTATCAAAAGAGTGCTTCCTAATGCACACCATAGGCTTTGTGCATGGCACATGTGTCGTAATGCTGCCAGTAATGTTAAAAATCCTAAGATGGTTTCAATGTTTAGGAAATGTATGTTGGGTGACTATGAGGTGTCTGAGTTTAAACACAGGTGGGAGGTAATGGTGAAGGAATTTCGACTTGAGGAAAACAATTGGGTGAAGGAAATGTATGAGAAAAAGAGGATGTGGGCCACAGCATACATAAGGGGAAACTTCTTTGCAGGGTTTAGGACAACGTCTCGATGCGAGGGGCTGCATGGGCAACTTGGAAAGTTTGTTCACTCCCGGACCGATTTGGTTGGATTTCTGAAAAATTATAGTCATTTCCTTGAAGTACTAAGGTATAATGAGTTAGAAGCTGATTTCGAGTCAGTATGTGGTGATATGGTCCTGGAGACTAACTTGCATGCACTAGAGAGATCAGCCTCTAAGATTTTCACAAAGGAGGTTTTCATATTGGTACATCCCGCCCTTGCCAGGGGAAGCACGATCAGGGTGATGGGCTGTACACAGCTGATGTCACAAACCATTTTTACAGTGTCCAAGTATGGTAGATCACTGAAGGAGTGGCAAGTGTCATATATTCCAGAACCACTATTCCTTAAATGTTCTTGTCAAAGAATGGAATCTTTTGGACTTCCATGTGATCACATAATCGGTGTGATGGTACACTTGAACGTACAAGAGATGCCAAAGTGTCTTGTGCTGAGTAGGTGGACCATAGGTGTGAAGGATAGTGCTTATGATATTAGGGATGGACGCAACTCGATTTGGGATTCTGTGTTTGATGTACGTTGTGGTTATTTGGATTTTTTGTGTAAGAAGATGAATAGATTGGGGGGCAGATCTGCTACAAGATTCAACGAGATTAAGGAGTGGGTTAGCAGTAAAATAAACTTGTATAGTGAATCACATACGAGTAGTGGTGATGGTAATGAAAATGCTACAGATGAAGTTGGACCAACATTGAAAGATCCAATTAGAGTTGGTTCAAAGGGGTGTGCAGTTGGTTCATCGTCACAAGGAAGAAGACGACCCCATAAATGTAGCCAATGTGGTGTTGCTGGTCATAATCGAACTACTTGCCCAAATAAAAGGAAATATGAGGCTCCTCTTGAGTCGGTAGAGGTAAGTACTCGTTTGAGTTATTTTTTTTTAAGTTATTTGAGTTAA 2283 0.4012 MENINENVGENVVGLEEIESENDGDNAFHYDSRQFVIGVDSEDDFVDLNPDLLSEENLKNFNFPNLDVAYNFYNNWYGKMKGFSARKGKERKNAMEEIIEKTYLCHREGKRPINTNEKMGKKKREAKPETRCLCPAKMKVRLDVHSGHWNVIKFCDAHNHEMLNPKYSGMLPAHRKLSEADILEMNNMRNACITTPQIYGSFASQSGGYNNVGFRKRDLYNEIGRQRMLQLSDAKGAIKYLREREQNEGSMFWRHTTDSEGRLQRLFWCDGQCKVDYKLFGDVLAFDATYRKNKYHFPLVVFSDINHHNQSTIFASYLVADETEETYVWVLEQFMVAMKGKMPSAVIIDGDLAMRNSIKRVLPNAHHRLCAWHMCRNAASNVKNPKMVSMFRKCMLGDYEVSEFKHRWEVMVKEFRLEENNWVKEMYEKKRMWATAYIRGNFFAGFRTTSRCEGLHGQLGKFVHSRTDLVGFLKNYSHFLEVLRYNELEADFESVCGDMVLETNLHALERSASKIFTKEVFILVHPALARGSTIRVMGCTQLMSQTIFTVSKYGRSLKEWQVSYIPEPLFLKCSCQRMESFGLPCDHIIGVMVHLNVQEMPKCLVLSRWTIGVKDSAYDIRDGRNSIWDSVFDVRCGYLDFLCKKMNRLGGRSATRFNEIKEWVSSKINLYSESHTSSGDGNENATDEVGPTLKDPIRVGSKGCAVGSSSQGRRRPHKCSQCGVAGHNRTTCPNKRKYEAPLESVEVSTRLSYFFLSYLS. 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03495 760 SMART 26again6 571 598 IPR006564 GO:0008270
Seca1g03495 760 Pfam SWIM zinc finger 563 596 IPR007527 GO:0008270
Seca1g03495 760 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 54 638 IPR031052 GO:0006355
Seca1g03495 760 ProSiteProfiles Zinc finger SWIM-type profile. 560 596 IPR007527 GO:0008270
Seca1g03495 760 Pfam MULE transposase domain 283 377 IPR018289 -
Seca1g03495 760 Pfam FAR1 DNA-binding domain 71 163 IPR004330 -
Seca1g03495 760 SUPERFAMILY Retrovirus zinc finger-like domains 699 738 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03495 Seca-Chr1 100375539 100377821 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca1g03495 MULE 6.8e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03495 - - tpra:123913749 692.189