Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03486 ATGGCAATTGCACGCACTGGAGTCTACGTCGACGACTATTTGGAGTATGCCAGCACATTGCCCGCTGAGCTTCAGAGGCTGCTCAATACTGTCCGAGAACTCGATGAACGATCCCAATCTATGATAAACCAGACCAGGCAGCAAACAAAGTACAGTATGGGGTTCTCATCACATGGCTCTAAGAAAGGTAACAGTTACACTAATGAGGATGATGATGCTGCTATTGAGAAAATGCGAAAAGAAATCGAGGCAAATCAAGACAGTGCATTGAGTCTATGTACTGAGAAAGTTTTGTTGGCACGGCAAGCATATGATTTGATAGATAGCCATGTAAAACGACTTGATGAGGATTTAAACAACTTTGCTGAAGATTTAAAGCAAGAGGGGAAAATACCACCAGATGAACCAGCAATTCTTCCCCCATTGCCTATAGTCCCTAAAACTGAAAAGCGCAGCAGGCCCTTATATGGAACACCTCAATCAAAGAGACTTGATTACAGGGATAGAGACTGGGATCGGGAACGTGATAGGGACTTTGAGCTAATGCCTCCACCAGGAAGCTATAAGAAGGAGTATGCAACCCCTATGGATGTTGATCAACCCATTGATCCAAATGAACCTACATACTGTGTTTGTCATCAGGTGTCTTTTGGAGACATGATTGCTTGTGATAATGAAAATTGCCAAGGAGGTGAATGGTTCCACTATGCATGCGTTGGCCTAACACAAGAGACAAGGTTCAAGGGAAAGTGGTATTGTCCCACTTGCAGATTACTACCACAATGTCAATGA 792 0.4356 MAIARTGVYVDDYLEYASTLPAELQRLLNTVRELDERSQSMINQTRQQTKYSMGFSSHGSKKGNSYTNEDDDAAIEKMRKEIEANQDSALSLCTEKVLLARQAYDLIDSHVKRLDEDLNNFAEDLKQEGKIPPDEPAILPPLPIVPKTEKRSRPLYGTPQSKRLDYRDRDWDRERDRDFELMPPPGSYKKEYATPMDVDQPIDPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYACVGLTQETRFKGKWYCPTCRLLPQCQ. 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03486 263 Gene3D - 5 119 - -
Seca1g03486 263 ProSiteProfiles Zinc finger PHD-type profile. 207 259 IPR019787 -
Seca1g03486 263 Pfam Inhibitor of growth proteins N-terminal histone-binding 9 121 IPR024610 -
Seca1g03486 263 PANTHER INHIBITOR OF GROWTH PROTEIN 2 257 IPR028651 -
Seca1g03486 263 MobiDBLite consensus disorder prediction 127 162 - -
Seca1g03486 263 SMART PHD_3 209 257 IPR001965 -
Seca1g03486 263 Coils Coil 24 44 - -
Seca1g03486 263 FunFam PHD finger protein ING 201 259 - -
Seca1g03486 263 SMART ING_2 9 121 IPR024610 -
Seca1g03486 263 SUPERFAMILY FYVE/PHD zinc finger 184 258 IPR011011 -
Seca1g03486 263 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 201 258 IPR013083 -
Seca1g03486 263 MobiDBLite consensus disorder prediction 38 68 - -
Seca1g03486 263 MobiDBLite consensus disorder prediction 38 63 - -
Seca1g03486 263 CDD ING_plant 17 118 - -
Seca1g03486 263 CDD PHD_ING 209 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03486 Seca-Chr1 99992007 100003079 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca1g03486 ING 1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03486 - - gmx:100787916 490.73