Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03479 ATGCCAGAGTTGAGAAGTGGAGCTAGAAGGTCGAAGCGACTTGGAGATCTTCAGCCTGGTCCACTACCTGTTGATCAAGGAGAAAATTGGGCACAGCCTGCTCCGAACAGAACTAGGAGGAGAGTTGGAGGTGGAAGAGGAAGAGGCGGTAATGCCACAGCTGTAGGTAAAGGGCCTTCACCAGCTGTACCCACAAGGCGAACTGCAGCTGGTAGAGGCCGCGGAGCAAGATTGATTGATCTAGATCCTGAACCCTGTGAGGTCCTTCCAGAACCTGTTGCTTTAGGGGCTCCGGAACCCATTTTCAATCAAGTAGAGGTAGTGGCCAATAATAATAATATTATGGTGGAGGGTGGAAGTGCAGATAAGGTGGCAGGAGCAGGAGCAGGAGCCGAAGAAGAAGCAACCACGACCCCTGTTCCCGAGAGGGTTCAAGTTGGTAGCTCTCCTGTATATAAGATAGAAAGGAAGTTAGGTAAGGGTGGTTTTGGCCAAGTTTATGTCGGCCGAAGGGTAAGTGGTGGTTCTGATCGAACTGGTCCTGACGCGATTGAGGTTGCGCTCAAGTTTGAGCATAGAAACAGTAAAGGTTGCAATTATGGGCCTCCCTATGAATGGCAAGTCTACAGTACTTTGAATGGTTGCTATGGCATTCCCTGGGTTCATTACAAGGGTCGACAAGGAGATTTCTATATTTTGGTCATGGACATGCTTGGGCCCAGTCTTTGGGATGTGTGGAATTCTCTTGGCCAATCGATGTCGCCAAGTATGGTTGCTTGCATTGCAGTGGAGGCAATATCAATTCTTGAGAAGCTCCATTTGAAAGGGTTTGTGCATGGAGATGTTAAGCCAGAAAACTTTTTGCTTGGTCAACCTGGAACAGCTGATGATAAGAAGTTATATCTTATTGATCTTGGTTTGGCCTCTAGATGGAAGGATGCGTCATCTGGTCAACATGTTGAATATGATCAGAGACCTGATATATTCAGGGGAACGATAAGGTATGCTAGTGTTCATGCACATTTAGGTAGGACTGGAAGTCGAAGGGATGATCTTGAGTCACTGGCATACACCTTAATATTTCTCATAAAAGGGAGATTACCATGGCAGGGTTATCAGGGTGACAATAAAAGTTTTCTTGTTTGTAAGAAAAAAATGTCCACTTCTCCAGAGTTGATGTGCTGCTTTTGTCCTGCACCATTTAAGCAGTTCCTAGAAGCTGTTACTAACATGAGATTTGATGAGGAACCAAATTATTCCAAGCTTATATCACTTTTTGAAAGCTTGATTGAACCATGCACTCCATTGAGACCTATCAGAATTGATGGGGCTTTAAAGGTTGGTCAAAAACGAGGAAGGATGCTTATAAATCTAGAAGAAGATGAGCAGCCTAAGAAGAAAGTGCGATTGGGGAGTCCTGCTACTCAGTGGATATCAGTTTATAATGCACGCCGTCCAATGAAGCAGAGGTATCACTATAATGTAGCGGACACTAGGCTCCGACAGCATGTAGACAAGGGTATTGAGGATGGGTTGTACATAAGTTGTGTGGCCTCTCAAGCAAATTTGTGGGCCCTAATCATGGATGCAGGAACAGGGTTTTCTTCCCAGGTTTATGAGTTATCACCTGCCTTCTTGCACAAGGATTGGATTATGGAGCAATGGGAGAAAAATTACTACATCAGTTCAATAGCTGGTGCAGTTAATGGGAGTTCCTTGGTTGTCATGTCCAAAGGAACTCCTTACACACAGCAGTCCTACAAAGTGAGCGAATCATTTCCTTTCAAATGGATAAATAAGAAGTGGAAGGAAGGATTCCATGTTACCTCCATGACTACTGCTGGAAATCGCTGGGGTGTTGTTATGTCCAGGAATGCTGGGTATTCTGATCAGGTTGTGGAGCTTGACTTTTTGTATCCAAGTGAAGGAATCCATCGACGATGGGAGAGTGGTTACCGGATTACGTCAATGGCTGCTACTACTGATCAGGCAGCCTTCATACTAAGCATACCAAAACGCAAATTGCTTGATGAAACTCAAGAGACTCTGCGTACATCTGCTTTTCCCAGTACCCATGTAAAGGAAAAATGGGCCAAGAATCTCTATATTGCCTCAATATGTTATGGGCGAACTGTTTGCTAG 2142 0.4486 MPELRSGARRSKRLGDLQPGPLPVDQGENWAQPAPNRTRRRVGGGRGRGGNATAVGKGPSPAVPTRRTAAGRGRGARLIDLDPEPCEVLPEPVALGAPEPIFNQVEVVANNNNIMVEGGSADKVAGAGAGAEEEATTTPVPERVQVGSSPVYKIERKLGKGGFGQVYVGRRVSGGSDRTGPDAIEVALKFEHRNSKGCNYGPPYEWQVYSTLNGCYGIPWVHYKGRQGDFYILVMDMLGPSLWDVWNSLGQSMSPSMVACIAVEAISILEKLHLKGFVHGDVKPENFLLGQPGTADDKKLYLIDLGLASRWKDASSGQHVEYDQRPDIFRGTIRYASVHAHLGRTGSRRDDLESLAYTLIFLIKGRLPWQGYQGDNKSFLVCKKKMSTSPELMCCFCPAPFKQFLEAVTNMRFDEEPNYSKLISLFESLIEPCTPLRPIRIDGALKVGQKRGRMLINLEEDEQPKKKVRLGSPATQWISVYNARRPMKQRYHYNVADTRLRQHVDKGIEDGLYISCVASQANLWALIMDAGTGFSSQVYELSPAFLHKDWIMEQWEKNYYISSIAGAVNGSSLVVMSKGTPYTQQSYKVSESFPFKWINKKWKEGFHVTSMTTAGNRWGVVMSRNAGYSDQVVELDFLYPSEGIHRRWESGYRITSMAATTDQAAFILSIPKRKLLDETQETLRTSAFPSTHVKEKWAKNLYIASICYGRTVC. 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03479 713 CDD STKc_CK1 152 426 - -
Seca1g03479 713 ProSitePatterns Protein kinases ATP-binding region signature. 158 189 IPR017441 GO:0005524
Seca1g03479 713 FunFam Casein kinase 1-like protein 120 472 - -
Seca1g03479 713 PANTHER CASEIN KINASE-RELATED 152 677 - -
Seca1g03479 713 SMART serkin_6 152 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g03479 713 Gene3D Transferase(Phosphotransferase) domain 1 119 469 - -
Seca1g03479 713 SUPERFAMILY Protein kinase-like (PK-like) 152 440 IPR011009 -
Seca1g03479 713 ProSiteProfiles Protein kinase domain profile. 152 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g03479 713 ProSitePatterns Serine/Threonine protein kinases active-site signature. 277 289 IPR008271 GO:0004672|GO:0006468
Seca1g03479 713 Pfam Protein kinase domain 152 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g03479 713 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03479 Seca-Chr1 99900364 99908758 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03479 269 426 MAP Kinase Kinase Kinase AT5G50180 24.375 2.40e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Seca1g03479 Pkinase 1.1e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03479 - - gmx:100801967 1350.88