Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03447 ATGGAAATTCAATTCCAGCAACCAAACCTGCAGCATCAGAAAGCAGGAATTTCAGTCAACAAAGGAGGAAAATTCAAAGGTAGAAACAGAAACAGCAACACAAACAAATTTGTTGGGGTTAGACAAAGGCCTTCAGGAAGATGGGTAGCTGAGATCAAAGACACAACTCAGAAGATAAGAATGTGGCTTGGCACATTTGAGACAGCAGAGGAAGCAGCCAGAGCTTATGATGAAGCTGCATGTCTTCTTCGTGGATCCAACACTCGCACCAACTTCATCACTCATGTCTCCTTGGATTCTCCTATTGCTTCTAGGATTCGAAATCTGCTTAACAATAGAAAAGGTATAAAAAAACAGGAAGATGTTGATGCATCTGAAAAACCAAGTGTCACCAACACTAGTAGTGTTACTACCACTCCTAGTAATACAAACAGTAGTGATAACAATGACAATTCTCTTTCAAATGGGACAACTCAAAACACAAAGCTGTTTGATGATACTTATAAACCAGATTTGAGTAATTGCAGGGAGGACTTTCTTTCAGCTCCTCAATCCAACATTTCATGGGGTTTTGGTTTTGGACCTGTTTTTGATCGTTTTCCCATTGGTCAGATATTGGATATACCAAAGACAGATGGCTTGACTGATATATCTGGCTTGGAGCTTTCAGAATTTGAAAGAATGAAAGTTGAAAGACAAATATCAGCTTCACTCTATGCTATTAATGGGGTGCAAGAGTACATGGAAACTGTTCAGGACCCCAATGAAGCTCTTTGGGATCTTCCACCTTTGTGTTCATTGTTCTGTTAA 810 0.3963 MEIQFQQPNLQHQKAGISVNKGGKFKGRNRNSNTNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITHVSLDSPIASRIRNLLNNRKGIKKQEDVDASEKPSVTNTSSVTTTPSNTNSSDNNDNSLSNGTTQNTKLFDDTYKPDLSNCREDFLSAPQSNISWGFGFGPVFDRFPIGQILDIPKTDGLTDISGLELSEFERMKVERQISASLYAINGVQEYMETVQDPNEALWDLPPLCSLFC. 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03447 269 Pfam AP2 domain 36 85 IPR001471 GO:0003700|GO:0006355
Seca1g03447 269 FunFam ethylene-responsive transcription factor RAP2-11 35 94 - -
Seca1g03447 269 Gene3D AP2/ERF domain 35 94 IPR036955 GO:0003700|GO:0006355
Seca1g03447 269 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Seca1g03447 269 MobiDBLite consensus disorder prediction 126 165 - -
Seca1g03447 269 MobiDBLite consensus disorder prediction 117 165 - -
Seca1g03447 269 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Seca1g03447 269 SUPERFAMILY DNA-binding domain 36 93 IPR016177 GO:0003677
Seca1g03447 269 MobiDBLite consensus disorder prediction 1 33 - -
Seca1g03447 269 MobiDBLite consensus disorder prediction 1 16 - -
Seca1g03447 269 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 28 235 - -
Seca1g03447 269 CDD AP2 36 92 IPR001471 GO:0003700|GO:0006355
Seca1g03447 269 PRINTS Ethylene responsive element binding protein signature 59 75 IPR001471 GO:0003700|GO:0006355
Seca1g03447 269 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03447 Seca-Chr1 98825746 98826555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03447 33 269 AP2-EREBP Transcription Factor Family AT5G19790 44.490 1.26e-51 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca1g03447 AP2 5.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03447 K09286 - gmx:100796898 406.371