Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03436 ATGAATGGCTCAGACATCCAACCTTCCTATGAAGATCTCCATTCCTATTCCATTGTCAAAAACAGAGACAGAACAATGCAAGTCTGTTTCAATAAAACTTTGTCCCATGGTTCTTCCCTTTGGGCAGAAAATACTATAGACACAACACTACCTGCATTTGTTCTACAATTTGCTCTTGTCCTATCACTCAATCGCATGTTCATCGTTGCTGCAGAATCAACCCATGTACCTCGTATTGTTGCTCATATTTTTACTGGTATTTTATTAGGTCCATCTGCTATTGGACGTTGGGATAATTTCTTCAAAACTATATTCCCTTATCAAACCATGTTGCCATTAGAGACAGTGGGAGCTTTGACCCTTGTTTACTATGTGTTCTTGATTGGCTTAGAGGTGGACTTGAAACCAATAACAAGGTGTTATAACAAGAAGGCTATGGTTGTTGCCATTGCAGGAACAATCTTCACCTTACCAATTGGGGTTATCTTGTACTACCTTCTTATCACTAACATGGGAAAAGTACCTGTGTCTTCTTCAGACAACATTAAACACATAAAGGGTGCAATATTATGGGGAATCACACTTTCTTGCAGCAGTGAGTTCCCTGAGATTGCAAAAATTCTTCAAGACCTAAAGCTTCTGCTAACAGAAAATGGACAATTGGCTCTAACCTCTTCTCTTGTTAATGACCTGTTCTCCTTTACCCTTATTCTGTTGGCCCTGACACAATTCAATTATGGTTCTATTTTGTCATTGATCATCACCCTCATGTTTGTGTTGGGGTGTTTTTTTGTGTTTCATCCTCTTGCTAAGTGGCTCATCAACAAGATTGGAAAAGGGGATCGAGATTTCGTTGAGTCACAAATAATAATTGTTCTCCATGTGGTTTTGGTTATTGGACTCTTCTCTGATGGGTTGGGAGCACAATCCATCACAGGTGCTTTCTTTTTAGGAGTTGTGATACCAAAGGGTGCTCTTAACAATGCAATTCAGGACAAGGTGTTTGATTTTGTGTCAGCATTCATGATGCCATTGTTCTTTGTTGTTGTTGGGGAGAGAATTCATGTCCAGGAATTTGATGACTTGAACATACAGTGGATAGCCGTTGTGATTGTTATTTTGCTGGCAATTATTACAAAGATAGTGTGCACTTTTGCAATCTCATGGTTCTATCAAATGCCTCTCCTTGAAGGATTGTCCCTTGCACTACTCATGAACACTAAAGGAACTGTGCCATTTGTCATTCTGTGCACCGGCAAGGACAGGCTTGAATTGGATAATCAAACCTTTGGGGTGATGTCATTGGCGTGTTGGTTAATGACAGCTATTGCGGGGCCTATCTTAGCTACTGTGACAAAAATCCTCAGCAAGAGGAATGTTCTTGGGAGCAAAAAACGGAAGAGCGTTCAAGGCACACGGCCAGACTCACCGCTTAGAGTGTTGGCCTGCGTCCACACAAAGCGTGATGCCAATGTTATCATCAACCTTCTCAAAGCATCAAGTCCATCCGTGAGATCTCCAATTCAGGTGTTGGCGGTTGAGCTGATCAAGATGACAATTCGCCCCACTTCATCACTTATCATAAGGGATGCTCGCAAGCCATCTTTTAACTCCAATTGCAGCAAAGTTGATAGCTTCAAGAAAGACAATGGAGGTAAGGACAACCTCATTAGCTTCGACAACCTTAGCCAAGCCATCTTTGCCGAAAAACTAAGGATCATCTCTGACTACAACTCCATGCATAAGGACATCTTAAACCTCTCAAGACGCAGAGGCGTCACCCTCATCATAACCACTCTCTACAAGCAACCCACCTATGATGGTTTAGGCGCCGGCACCGCCACCGCTAGAGCCGTGAATATCATCAATAGGGACCACACAAGCAAAGATGAGAAGAAAGTGGTGTTGGAGAATCTAGTAAAAGAGGCACCTTGTTGCTTGGCCATATTTGTAGATAGAGGGTTGGATCAAAAACCCGGCGATAATAAGGAGAAACGAATAGCAATGTTCTATATTGGTGGTGAAGATGATCGTGAAGCACTTTCTTACGCTTGGAGGATGAGTAGGAACATGGAGGTCCAGTTAACGGTGGTGCGCCTCGTTTGGAATAGCCCTGATGATGAGTTTGATGAAACAGATAAGGTGTATTTGAAGGAGTTTGTGCAACAAGCAAAAGACACGCCGAGGGTGAGGTATTTGGAGAAGGTTGTGAAGGATGAGAAAGAAACAGTGACACTTTTGAATAAGATAGGGAATAAAGGGTTTGATTTATATGTAATTGGGAGAGGGCATGGGAGGAAGATGTCGTTGGCACAAACGGTGGATCCTGTGTTGGAAGAGCCTGCGTTGGGTCCTCTTGGGGATGCTTTGACGGATTTGAACTCTGCTGCAGAGACATCCATTTTGATATTGCAAACACAAGGTGAACAACATGGTGGTGATGATTTGGGAAAACATGAGCGGTCTGCGTCTGCACAACTTTTTGATAATGTGGTTCAGCAGCAAGTGATGTTTCCTCCAGCAGCATATCCGCCAATGGTTTTTAGTCACTATGCTTAA 2559 0.4267 MNGSDIQPSYEDLHSYSIVKNRDRTMQVCFNKTLSHGSSLWAENTIDTTLPAFVLQFALVLSLNRMFIVAAESTHVPRIVAHIFTGILLGPSAIGRWDNFFKTIFPYQTMLPLETVGALTLVYYVFLIGLEVDLKPITRCYNKKAMVVAIAGTIFTLPIGVILYYLLITNMGKVPVSSSDNIKHIKGAILWGITLSCSSEFPEIAKILQDLKLLLTENGQLALTSSLVNDLFSFTLILLALTQFNYGSILSLIITLMFVLGCFFVFHPLAKWLINKIGKGDRDFVESQIIIVLHVVLVIGLFSDGLGAQSITGAFFLGVVIPKGALNNAIQDKVFDFVSAFMMPLFFVVVGERIHVQEFDDLNIQWIAVVIVILLAIITKIVCTFAISWFYQMPLLEGLSLALLMNTKGTVPFVILCTGKDRLELDNQTFGVMSLACWLMTAIAGPILATVTKILSKRNVLGSKKRKSVQGTRPDSPLRVLACVHTKRDANVIINLLKASSPSVRSPIQVLAVELIKMTIRPTSSLIIRDARKPSFNSNCSKVDSFKKDNGGKDNLISFDNLSQAIFAEKLRIISDYNSMHKDILNLSRRRGVTLIITTLYKQPTYDGLGAGTATARAVNIINRDHTSKDEKKVVLENLVKEAPCCLAIFVDRGLDQKPGDNKEKRIAMFYIGGEDDREALSYAWRMSRNMEVQLTVVRLVWNSPDDEFDETDKVYLKEFVQQAKDTPRVRYLEKVVKDEKETVTLLNKIGNKGFDLYVIGRGHGRKMSLAQTVDPVLEEPALGPLGDALTDLNSAAETSILILQTQGEQHGGDDLGKHERSASAQLFDNVVQQQVMFPPAAYPPMVFSHYA. 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03436 852 PANTHER CATION/H + ANTIPORTER 30 808 - -
Seca1g03436 852 Pfam Sodium/hydrogen exchanger family 68 452 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Seca1g03436 852 Gene3D - 585 783 - -
Seca1g03436 852 Gene3D - 51 460 IPR038770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03436 Seca-Chr1 98684335 98689675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03436 28 805 Antiporter Super Family AT2G13620 33.292 5.92e-139 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03436 K26731 - psat:127126630 1154.04