Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03434 ATGATCAACGTCCACTCTCGTCACACCATCGTCCCTTCTGAATCCACCCCAAATCAAAAACTCTTTTCCTTATGCGAACAAATCAAGCTTCGCACTCACGCTCCTCTCCTCTACGTGTATAGCAACCCACATGACCAAGACAGTGCATCAACCTTCCTTCAGACCCTAACAAACTCCCTTAGCCAAGCTTTGGTTATTTACTATCCACTCGCGGGAAGGTTGAGTTTGATCGAAGGAGCGCGATGGGAACTCAATTGCAACGCCAAGGGAGCACATCTATTGGAAGCCAAATGCGAAGAAATAACCTTAGATGAGTTGGGCGATTTTGTTCCTACCAACTTGGTACCCCAACTTATACCCAAAATCGATTATACTGTTCCCATTGAAGAGATGCCTCTGCTGTCTGTGCAACTAACCAGGTTCCGTTGTGGTGGTTATACCATGGGCGTGGCCTTATGTCGCGCCGCAATTGACGGAACCTCAGCCATGCGTTTCATGAACGCGTGGGCGAAGCTAGCGCGTGGGGAGCATTTAGACCTAACCGAAACGCCATGTCACGATCGAACCGCGCTAGATTCACGCAAGCGGTTGCATTCACACAACCATTCAGAGTTTCACGCGCCTCCTGTTTGGTTAGGACGTGGTTTGGGAGAAACAGAGGCAGTGGTTGCAGTTGTGAAACTCACTGCAGAACAAGTTACAAAGCTTAAGAAGAAGGCTGGTAATACTGCAGCACAAACAAGACCTTATTCAACTTTTGAGGTGATTTCAGGGCACCTTTGGAGGTGTATAAGCAAAGCACGCTATTCAGGAAACGGTTACCAACCTACGAGATTATCAACGTTGGTTAATTGTAGGAACCGTTTGAGGCCACCGCTTCCTAGCGGTTATGCCGGGAATGCAGCATTTCCTACGGTGACAGAAACATGCTCCTTTGATGAAATTATGCATAGGCCTTTAAGTTATGCAGTTGAGAATGTGAGGAAAGCACTTGAGAGAGTGACAGGGGAGTTTGTGATGTCAGCGCTTGATTACATAGATAGGGAGAAGGACATGGAATTGGTGAGGTATAATTTTCACTATCCTGCGCCAAGTGTGCATCAAGGACCGTTCAAAGGGAACCCGAACCTTTTTGTTGTGAGTTGGATGAATTTTTCGTTTAAGGATGCGGATTTTGGGTGGGGAAAACCTGTTTATTTTGGACCAGGGTACATGGATTCCGAAGGGAAAGCCTTCCTTCTGAATAATGCTAATGGTGATGGCGTTGTTGTGGCGATTTCTTTGGATACGTCTCACATGGATGCCTTCAGGAAATTTTTTTACGGTGATATTGAAGAGGTATTTCCCGCTTCCAAACTGTGA 1362 0.4655 MINVHSRHTIVPSESTPNQKLFSLCEQIKLRTHAPLLYVYSNPHDQDSASTFLQTLTNSLSQALVIYYPLAGRLSLIEGARWELNCNAKGAHLLEAKCEEITLDELGDFVPTNLVPQLIPKIDYTVPIEEMPLLSVQLTRFRCGGYTMGVALCRAAIDGTSAMRFMNAWAKLARGEHLDLTETPCHDRTALDSRKRLHSHNHSEFHAPPVWLGRGLGETEAVVAVVKLTAEQVTKLKKKAGNTAAQTRPYSTFEVISGHLWRCISKARYSGNGYQPTRLSTLVNCRNRLRPPLPSGYAGNAAFPTVTETCSFDEIMHRPLSYAVENVRKALERVTGEFVMSALDYIDREKDMELVRYNFHYPAPSVHQGPFKGNPNLFVVSWMNFSFKDADFGWGKPVYFGPGYMDSEGKAFLLNNANGDGVVVAISLDTSHMDAFRKFFYGDIEEVFPASKL. 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03434 453 Gene3D - 1 207 IPR023213 -
Seca1g03434 453 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 10 438 - -
Seca1g03434 453 Pfam Transferase family 2 440 - -
Seca1g03434 453 Gene3D - 217 442 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03434 Seca-Chr1 98608160 98609521 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03434 2 441 Monolignol Biosynthesis Gene Families AT5G48930 36.424 6.39e-86 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03434 K13065 - gmx:100775549 647.121