Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03400 ATGGGAAATAAAGGCTCTCTCTCTGTGTTTCTGGTGTTGGTTACTCTTTTACTTTCTATCTATCATTCAGAGCAACTTCAATCCTCCAACTCTCAGACCCTTCTAAGAATTCAACAGCTATTGAACTTTCCTGCTGCTTTAAGCAAATGGAATAACAACACAGACTTTTGCAGCACAGATTCAAACTCTTCTCTCAATGTAATATGTTATGAAGACACCATAACCCAATTGCACATAATAGGTGAAAGAAGTGCTCCACTTAGAAATTTCTCAATAGATTCCTTTGTCACAACACTGGTAAAGCTTCCCAGTTTGAAAGTCCTCACATTGGTTTCTCTTGGTATATGGGGTCCATTGCCTGGTAAGATAGCTCGTCTTTCATCATTGGAAATAGTTAATGTGAGTTCAAATTATCTCTATGGTTCCATCCCTCAGGAACTTTCATCACTGTCAAATCTTCAAACACTCATTCTTGACAACAACAACTTTGGTGGCCAGATTCCTGATTGGTTTGATTCACTTCCAGCCTTAACTGTGTTAAGTTTGAAAAACAATTTATTCAATGGATCTCTACCAAATTCACTCAGTATCTTGGAGAATTTGAGAGTTCTTTCACTTTCTCATAATCACTTTTATGGGGTAGTGCCTGATTTGAGCCGTTTGACAAATCTTCAAGTGCTGGAATTAGATGATAATGCTTTTGGACCTGAGTTTCCTCATCTTGGTAACAAGTTGGTTGCTCTTGTGCTAAGAGGTAATAGGTTCAGGTCCGGTATTCCTGCTGAAGTGAGCTCATATTTTCAGCTTCAGAGATTGGATATCTCATCAAATTCATTTGTGGGGCCTTTCCAGCCAGCATTGTTGTCACTACCTTCTATTACATATCTGAACATTTCTGGGAACAAATTAACTGGGATGCTGTTTGAGAATCTGTCTTGCAATTATGAGCTTGAAGTAGTTGATTTATCCTCAAATCTTTTGACTGGGAGCTTACCTAGATGTTTACTGTCAAATTCTAGTGATAGGACTTTCCTGTATGCTAGAAATTGTCTAGAGAAAACGAATCAAAATCAGAACCCACCACCCTTTTGCCACACTGAAGCCTTAGCTGTGGGAATATTACCTGAAGGAAAGAAGCACAAACAAGTATCAAAGGTAGTTCTTTCCCTTGGCATAATAGGAGGGACTCTTGGAGGAGTAGCACTTTGTTTGCTGATTTTCTTTATTGTTAGAAGAGGAAATGCCAAAAGCAAAATGAAGAATCCTCCAACAAGATTAATATCAGAGAATGCAGCTTCTGCATACACCTCTAAGTTGCTTTCTGATGCAAGGTATATATCTCAAACAAAGAAGTTAGGAGCAGCTGGCCTGCCAACTTACCGAAGTTTCTCATTAGAAGAGATTGAGGTAGCTACAAACAACTTTGACACAGCTTCTTTAATGGGCGAGGATTCTTATGGGCAGATGTGCAGAGGTCAGCTGAAGAATGGCACGCTTGTTGCCATTAGATGCATCAAAATGAAAAAAAGATACAGCACTCAAAACTTTATGCCTCACATAGAGCTGATTTCAAAACTTAGGCATCGTCATTTAGCCAGCGCTCTTGGACACTGCTTTGAATGTTCTTTAGATGACTCAAGTGTCAGCAAAATATTTCTTGTCTTCGAATATGTACCAAATGGCACCCTCAGGAGCTGGATCTCTGATGAACATGCTAGAAAAACCTTGAGTTGGACTCAACGCATAGGAGCTGCAATTGGTGTAGCAAAGGGAATCCAATTTTTGCATACAGGAATTGTCCCTGGTGTATATTCCAACAATCTCAAAATAGATGATGTTTTATTGGATCAGAATCTTGTTGCAAAAATCAGCAGTTATAACCTGCCTCTCTTATCTAACATTGGAAAGGTTCGGCATGGAAATTCTTCCAATGGATTAAAAAATTCTACCGGTAATAAAAGTGCAAAGCAAGAAGATAAGTCTGACATATACGATTTTGGAGTAATACTATTGGAACTCATTCTAGGAAGGACAATAAAGACAACAAATGATGCAGATGCTTTTAAGGATCTGTTGCAAGCAAGCATAGGAGCTGATGATGAGGCTAAGAGGAGCATTGTTGATCCAGCAATTCGCAAGGCATGCTTGGATCAATCATTGAAGACAATGATAGAGATTTGTGTGAGGTGCCTGGCCAAAGATTCAGCAGATAGGCCCTCTATAGAGGATGTTTTGTGGAATTTGCAGTTTGCTGCTCAAGTTCAAGATGCTTGGAGAGGAGATTCTCAAAGTAGTGAGGGATCACCAGGCTCACCTTTAGAGTCTCGAAGATTGCCCTTCCATTAG 2346 0.3951 MGNKGSLSVFLVLVTLLLSIYHSEQLQSSNSQTLLRIQQLLNFPAALSKWNNNTDFCSTDSNSSLNVICYEDTITQLHIIGERSAPLRNFSIDSFVTTLVKLPSLKVLTLVSLGIWGPLPGKIARLSSLEIVNVSSNYLYGSIPQELSSLSNLQTLILDNNNFGGQIPDWFDSLPALTVLSLKNNLFNGSLPNSLSILENLRVLSLSHNHFYGVVPDLSRLTNLQVLELDDNAFGPEFPHLGNKLVALVLRGNRFRSGIPAEVSSYFQLQRLDISSNSFVGPFQPALLSLPSITYLNISGNKLTGMLFENLSCNYELEVVDLSSNLLTGSLPRCLLSNSSDRTFLYARNCLEKTNQNQNPPPFCHTEALAVGILPEGKKHKQVSKVVLSLGIIGGTLGGVALCLLIFFIVRRGNAKSKMKNPPTRLISENAASAYTSKLLSDARYISQTKKLGAAGLPTYRSFSLEEIEVATNNFDTASLMGEDSYGQMCRGQLKNGTLVAIRCIKMKKRYSTQNFMPHIELISKLRHRHLASALGHCFECSLDDSSVSKIFLVFEYVPNGTLRSWISDEHARKTLSWTQRIGAAIGVAKGIQFLHTGIVPGVYSNNLKIDDVLLDQNLVAKISSYNLPLLSNIGKVRHGNSSNGLKNSTGNKSAKQEDKSDIYDFGVILLELILGRTIKTTNDADAFKDLLQASIGADDEAKRSIVDPAIRKACLDQSLKTMIEICVRCLAKDSADRPSIEDVLWNLQFAAQVQDAWRGDSQSSEGSPGSPLESRRLPFH. 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03400 781 ProSiteProfiles Protein kinase domain profile. 475 750 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g03400 781 Gene3D Ribonuclease Inhibitor 27 242 IPR032675 -
Seca1g03400 781 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 558 764 - -
Seca1g03400 781 SUPERFAMILY L domain-like 35 351 - -
Seca1g03400 781 Gene3D Transferase(Phosphotransferase) domain 1 558 765 - -
Seca1g03400 781 MobiDBLite consensus disorder prediction 759 781 - -
Seca1g03400 781 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 448 557 - -
Seca1g03400 781 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 27 242 - -
Seca1g03400 781 SMART LRR_typ_2 198 221 IPR003591 -
Seca1g03400 781 SMART LRR_typ_2 150 173 IPR003591 -
Seca1g03400 781 SMART LRR_typ_2 174 197 IPR003591 -
Seca1g03400 781 SMART LRR_typ_2 290 310 IPR003591 -
Seca1g03400 781 ProSiteProfiles Leucine-rich repeat profile. 200 222 IPR001611 GO:0005515
Seca1g03400 781 Pfam Protein tyrosine and serine/threonine kinase 479 745 IPR001245 GO:0004672|GO:0006468
Seca1g03400 781 Pfam Leucine rich repeat 151 211 IPR001611 GO:0005515
Seca1g03400 781 PANTHER UNNAMED PRODUCT 94 680 - -
Seca1g03400 781 Gene3D Ribonuclease Inhibitor 243 361 IPR032675 -
Seca1g03400 781 SUPERFAMILY Protein kinase-like (PK-like) 458 750 IPR011009 -
Seca1g03400 781 Gene3D Phosphorylase Kinase; domain 1 446 557 - -
Seca1g03400 781 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase isoform A 243 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03400 Seca-Chr1 97655598 97662354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03400 43 779 Miscellaneous Gene Families AT3G03770 63.306 0.0 892
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Seca1g03400 PK_Tyr_Ser-Thr 1.1e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03400 - - gmx:100807539 1289.25