Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03397 ATGACTGAGCCACAAGTTAGTAGTGATCATCATGGCACTTCTAGTTCTGGCGCTAAGCGTAAAGGCATGGTTAATTCAAAGCGTGGCATGGCATCATCATCATCATCACAAGCTCCACCATGTGGGGCATGCAAGTTCCTAAGGAGAAAGTGCATTAATGGGTGCATATTTGCACCTTACTTTGGTTCAGACCAAGGTGCAGCACTGTTTGCAGCTGTGCACAAAGTGTTTGGTGCAAGCAATGTGTCAAAGCTTTTGTTGCATATTCCGGTCAATCGCCGCCATGAAGCAGTGATTACTATATCATATGAGGCTCAAGCAAGGTTGTCTGATCCGGTTTATGGTTGTGTGTCCACCATTCTTGCTTTGCAACAACAGGTTGTGGCATCTTTGCAAGGGGAGCTTGATATGGTCCAAACTCAACTGGTAAATAGTAGGTTTGCATATGCAAGTATTTTTCAGCAACAACAACAACCAAACATCAGTGTAGCTTTACAACCATCGTACTCCAACAATTCCATATCTGCTTCCACCAACTTTATGAACATGAGCTCCTACTCGAACCCTATAGGTTTTGACCACCATGCTATGGACACAACACCCTCATCACATAGTTTCGAGCCTCTTCAACTCTCTCTCTTATCCCAAGATGAAGACGATGAGGAAGAAAGCAAGATCCCCCAAACTTTCAACCATGAGATAGTAACTAATCGCTAA 717 0.4379 MTEPQVSSDHHGTSSSGAKRKGMVNSKRGMASSSSSQAPPCGACKFLRRKCINGCIFAPYFGSDQGAALFAAVHKVFGASNVSKLLLHIPVNRRHEAVITISYEAQARLSDPVYGCVSTILALQQQVVASLQGELDMVQTQLVNSRFAYASIFQQQQQPNISVALQPSYSNNSISASTNFMNMSSYSNPIGFDHHAMDTTPSSHSFEPLQLSLLSQDEDDEEESKIPQTFNHEIVTNR. 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03397 238 ProSiteProfiles LOB domain profile. 39 142 IPR004883 -
Seca1g03397 238 PANTHER LOB DOMAIN CONTAINING PROTEIN 36 206 - -
Seca1g03397 238 MobiDBLite consensus disorder prediction 216 238 - -
Seca1g03397 238 MobiDBLite consensus disorder prediction 1 40 - -
Seca1g03397 238 Pfam Lateral organ boundaries (LOB) domain 40 139 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03397 Seca-Chr1 97625666 97627658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03397 40 224 AS2 family AT3G03760 61.809 1.48e-70 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca1g03397 LOB 1.1e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03397 - - ahf:112698228 286.189