Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03387 ATGCCGAACACCTCACAGGTTATTACATGCAAAGCTGCAATATGCTGGGGGCTAGGAAAGCCTGTGACAGTGGAAGAAATACAAGTAGATCCACCAAAAGCAAATGAAGTTAGAGTTAAGATGCTTTGTGCCAGTTTATGCCACACAGACATCTCAAGCACTAAAGGATTCCCACATGGTAATTTTCCTCTAGCACTTGGACATGAAGGAGTTGGAACTAATTTCATGTATTGCATAAATTTCAGTGTTGTAGAAAGTGTTGGTGATCAAGTGACAAATGTGAAAGAAGGGGATATGATAATTCCAACATATGTAGGAGAGTGTCAAGAATGTGAGAATTGTGTTTCAGGAAAAACCAATGTGTGTCTCACATACCCTATAGCAATGGGAATGACTGGTCTAATGCCAGATAACACTTCAAGGATGTCCATAAAAGGCCAACAACTATACCATATTTTTAGTTCTGCCACATGGTCAGAGTACATGGTTACTGATGCCAACTACCTTCTCAAAGTTGATCCAAGCATTAATCTAGCCTATGCTAGTTTCATCTCATGTGGTTTTTCAACTGGTTTTGGAGGTGCTTGGAAGGAAGCCAAGGTTGAAAGTGGATCAAGTGTTGCTGTTTTTGGTCTTGGAGCTGTTGGATTAGGGGCTATAAGCGGAGCTAAAATGATGGGAGCAAATAAGATAATTGGGATTGACAAAAATGAGATGAAGAGAGAAAAAGGAGAAGCTTTTGGAATGACTGACTTTATAAATCCTAGTGATTCTGCTAAATCTGCTTCAGAATTGGTCAAGGAACTGAGTGGTGGAATGGGTGTGGATTATTCCATTGAGTGCACTGGAGTTGCCCCTTTGCTTACAGAATCTGTGGAAGCCTCAAAATTGGGAACAGGTAAGACAATAGCAATTGGTATAGGAGCTGAAACTGTTGTGCAGTTTGATGTTCTTGCCATTTTGTTTGGTAGAACTTTGAAAGGTTCTGTTTTTGGAGGGCTAAAAAACTTATCGGACCTTTCCATCATAGCTGACAAATGTGTGAAAGAGGAACTCCCTCTCCAGGAACTATTCACCCATGAGGTCCCATTATCTGATATAAACAAAGCATTTGAGATATTGAAACAACCCGATTGTGTGAAAGTAATCATCAAGATGTGA 1161 0.4014 MPNTSQVITCKAAICWGLGKPVTVEEIQVDPPKANEVRVKMLCASLCHTDISSTKGFPHGNFPLALGHEGVGTNFMYCINFSVVESVGDQVTNVKEGDMIIPTYVGECQECENCVSGKTNVCLTYPIAMGMTGLMPDNTSRMSIKGQQLYHIFSSATWSEYMVTDANYLLKVDPSINLAYASFISCGFSTGFGGAWKEAKVESGSSVAVFGLGAVGLGAISGAKMMGANKIIGIDKNEMKREKGEAFGMTDFINPSDSAKSASELVKELSGGMGVDYSIECTGVAPLLTESVEASKLGTGKTIAIGIGAETVVQFDVLAILFGRTLKGSVFGGLKNLSDLSIIADKCVKEELPLQELFTHEVPLSDINKAFEILKQPDCVKVIIKM. 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03387 386 Gene3D - 191 329 - -
Seca1g03387 386 SUPERFAMILY GroES-like 4 202 IPR011032 -
Seca1g03387 386 FunFam alcohol dehydrogenase 1-like isoform X1 18 190 - -
Seca1g03387 386 PANTHER ALCOHOL DEHYDROGENASE 6 378 - -
Seca1g03387 386 Pfam Alcohol dehydrogenase GroES-like domain 35 172 IPR013154 -
Seca1g03387 386 FunFam S-(hydroxymethyl)glutathione dehydrogenase 191 329 - -
Seca1g03387 386 Gene3D - 13 381 - -
Seca1g03387 386 Pfam Zinc-binding dehydrogenase 214 334 IPR013149 -
Seca1g03387 386 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 177 345 IPR036291 -
Seca1g03387 386 CDD liver_alcohol_DH_like 8 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03387 Seca-Chr1 97334223 97337001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03387 35 378 Monolignol Biosynthesis Gene Families AT2G21730 26.496 1.85e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03387 K00121 - gmx:100798341 610.142