Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03378 ATGGCACCCTTCATCTCCAATTCCAAGCTTCAACCCAGAAAACTCATTCTTGTCCTTAACATTTCTTTCATTTTCCTCCTCTGTCTCCTTCTAAAAGCCTATCTCCACCCTACAAACTCAATTTTTCATGGCCAGTCCAACAATGTTCCCATCACAACCATGTTCAACCATGCTAGGTTGCTCAATGATATTAGTGTTGATGGTTGCACTGACCTCCATAAGTATTCAGATTCTGCTTCTAAGTGTTCATATGTCACAACCCATCTTGACTGCAGGTCAAAAGGGTACATAAACTATATTCAAATCTTTTATTGCAATCTAGGCCATACCCCAATTATAGGATATTCTCTTCTTGCCTTATGGCTTGTGGTGTTGTTCTATCTTTTGGGTGACACAGCTTCCAATTACTTTTGCAACTCATTAGAAGGCCTTTCCAACATCTTGAGGCTATCTCCAACCATTGCTGGAGTAACACTGCTTTCTCTTGGAAATGGAGCTCCAGATTTTTTTGCTAGTGTTGTTTCTTTCACAGGATCTAGCAATGGTGATGTTGGTCTCAACAGCATTCTAGGAGGGGCTTTTTTTGTGTCAAGCACTGTTTTGGGGATTATAAGCATTCTGGTTAGCTCAAAACAAGTTACAGTTGACAAGGCATGTTTCATTAGGGATGTTCTTTTCTTCCTTTTCTCTTTGCTCATCCTCCTTATCATCATTTCCATTGGTAAAATCACCTTATTGGGTTCAATCTGCTATGTTTCTATCTACTTCCTTTATGTCTGTGCTGTCTCTGCAACACATCTATTCTATGGAGGGGATAAGAAAGAAAGGGATTTCACACTGTCTTTTGATCAGTTACTAGAGTCTAGCATACCTTTGCTGGGCTATGTTGATGATGAGAAACCAAATTTAGGAGAGATAGTAGTTGTTGAAGATAAGAAGGAGGAAAAGTCAGGGAGTTTTGGTAATGATTCATTTCACTGTATGTACTTGGGAAAGTTACTACTACAAGTACTAGAATTACCTCTTTGCTTACCAAGAAGGCTTACTATACCAGTGGTAAGTGAGGAGAAATGGTCAAAACCATATGCAGTAATATCTGTCACATTAGCACCAGTTTTTTTGGCAGCTCTTTGTAATACTCAGAGGGAAAACATGGGTTCAAAGAGTAGTCTAGTTGTGTATTTGACAGCTGCATTGGTTGGCATAGTTTTGGGAAATATGGCATTTGTGACTACTAAGAGGTGTAGCCCACCAAGTAAGTCCTTGTTTCCTTGGTTGGCAGGGGGTTTTGCTATGAGTGTATCATGGACTTACATAATTGCTCAGGAGTTGGTTTCCCTCTTGGTTTCAATTGGGAATATTATTGGTATTAGTCCTTCAATCCTTGGGTTAACTGTCCTAGCTTGGGGTAACTCACTTGGGGACTTGATAGCCAATGGTGCCATGGCTTTGAATGGTGGGGCAGATGGTGCACAAATGGCTATATCTGGTTGTTATGCTGGTCCTATGTTTAATACCTTGATGGGTTTGGGCTTGCCTCTTGTTCTATCAGCATGGTCTGAATATCCAGATCCATTTGTCATTCCTAAGGATGATTCCCTCTATGAAACCCTTCTTTTCTTGATTGGAGGGTTGCTTTGGGCCCTTGTAATATTGCCAAAGAAGAATATGAAGCTGGATAAATACTTAGGAACAGGACTCTTGAGCATATACCTATGCTTTTTGTTTATAAGGTTAGTCATGGCTTTTGGTATTCTGAAATTCTAG 1767 0.4007 MAPFISNSKLQPRKLILVLNISFIFLLCLLLKAYLHPTNSIFHGQSNNVPITTMFNHARLLNDISVDGCTDLHKYSDSASKCSYVTTHLDCRSKGYINYIQIFYCNLGHTPIIGYSLLALWLVVLFYLLGDTASNYFCNSLEGLSNILRLSPTIAGVTLLSLGNGAPDFFASVVSFTGSSNGDVGLNSILGGAFFVSSTVLGIISILVSSKQVTVDKACFIRDVLFFLFSLLILLIIISIGKITLLGSICYVSIYFLYVCAVSATHLFYGGDKKERDFTLSFDQLLESSIPLLGYVDDEKPNLGEIVVVEDKKEEKSGSFGNDSFHCMYLGKLLLQVLELPLCLPRRLTIPVVSEEKWSKPYAVISVTLAPVFLAALCNTQRENMGSKSSLVVYLTAALVGIVLGNMAFVTTKRCSPPSKSLFPWLAGGFAMSVSWTYIIAQELVSLLVSIGNIIGISPSILGLTVLAWGNSLGDLIANGAMALNGGADGAQMAISGCYAGPMFNTLMGLGLPLVLSAWSEYPDPFVIPKDDSLYETLLFLIGGLLWALVILPKKNMKLDKYLGTGLLSIYLCFLFIRLVMAFGILKF. 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03378 588 PANTHER NA+/CA2+ K+ INDEPENDENT EXCHANGER 18 586 - -
Seca1g03378 588 Gene3D - 150 276 IPR044880 -
Seca1g03378 588 Gene3D - 362 580 IPR044880 -
Seca1g03378 588 Pfam Sodium/calcium exchanger protein 119 261 IPR004837 GO:0016020|GO:0055085
Seca1g03378 588 Pfam Sodium/calcium exchanger protein 426 579 IPR004837 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03378 Seca-Chr1 97189611 97191377 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03378 67 586 Antiporters AT5G17860 52.562 0.0 521
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03378 K13754 - gmx:100819204 813.527