Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03377 ATGAGATTGTTGGGTCAGAGGAGCTTCGTTGCAGTCTTGGGTGGAACGTTGTTGGTGGGGAGATGTCGATATGGTTTGAAGGGTGGAAGGATTGAAGCAACCGTTCCGAAGCAACACATGAACAAGTTCTCTCACTCTGTCATTGAGGGACGGATTTATAGGATCACCAATTTTGGAATCCTTCGCAACAGTGGAAAGTTCAGGGCAGTTGTTCATGAGTTTAAGCTCATATTCAATGCAGCTACGAAGGTTATTCTGTGCCCAAATGTTTCCATCTCATTATCTGGGTTTGCACTCTTGAAGAGTGAGGACATCAAGAAAACCAATGGGCGCTCAGAATACCTCTTAGATTTCATGGGCATCGTGACAACTGTTTCAGAGGAGATCAATATGAACAAGGAGGGCAGGGAGACACGCCTCATGCTCATTGATTTAGTGGATGAGATGAGACAAATCCGCTTGGCATTGTTTGGAGACATGATAGATGTGGTTGCTGGATATCTGTCTCTTCCTTGA 516 0.4496 MRLLGQRSFVAVLGGTLLVGRCRYGLKGGRIEATVPKQHMNKFSHSVIEGRIYRITNFGILRNSGKFRAVVHEFKLIFNAATKVILCPNVSISLSGFALLKSEDIKKTNGRSEYLLDFMGIVTTVSEEINMNKEGRETRLMLIDLVDEMRQIRLALFGDMIDVVAGYLSLP. 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03377 171 Gene3D - 89 170 IPR012340 -
Seca1g03377 171 SUPERFAMILY Nucleic acid-binding proteins 28 91 IPR012340 -
Seca1g03377 171 SUPERFAMILY Nucleic acid-binding proteins 100 164 IPR012340 -
Seca1g03377 171 CDD RPA1_DBD_A_like 27 84 - -
Seca1g03377 171 Gene3D - 26 88 IPR012340 -
Seca1g03377 171 Pfam Domain of unknown function DUF223 27 92 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03377 Seca-Chr1 97125902 97127326 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03377 28 162 Core DNA Replication Machinery Family AT2G06510 25.180 2.16e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03377 - K02945 lja:Lj1g3v3385890.1 114.005