Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03363 ATGGGACGTGTGGGGTGCGTTTGCATTGGAGCAGAGGGGAAAGGTGACGTATCACCCAGAAGGCTATTCCAGGGAGACGCGTGGTGGAGGATGTCATCTAAGCAGTTCTCGGTGAAGGATCTTCTTCAATTGGGTGAGCAGATTGGCAATGTAAGCACAAATTTAACAGAGGAAATGGTTATAAATCAAATGAAGACAAAGACTGTTAATTTGGAGGAGTCATCTTCTGAGGAACAAGAAGCTGATTCTTGTGTAATATGCCAGGATGAATATAAGAACGGAGAGAAAATTGGAATTCTTCGATGTGGGCACGAGTATCATGCAGATTGTTTAAGGCAATGGATACTTGTGAAAAATGTCTGCCCCATATGCAAATCAGTAGCATTGACTCCTTGA 396 0.4318 MGRVGCVCIGAEGKGDVSPRRLFQGDAWWRMSSKQFSVKDLLQLGEQIGNVSTNLTEEMVINQMKTKTVNLEESSSEEQEADSCVICQDEYKNGEKIGILRCGHEYHADCLRQWILVKNVCPICKSVALTP. 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03363 131 SUPERFAMILY RING/U-box 83 128 - -
Seca1g03363 131 Pfam Ring finger domain 82 125 IPR001841 -
Seca1g03363 131 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 31 129 IPR045191 GO:0061630
Seca1g03363 131 ProSiteProfiles Zinc finger RING-type profile. 84 125 IPR001841 -
Seca1g03363 131 SMART ring_2 84 124 IPR001841 -
Seca1g03363 131 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 128 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03363 Seca-Chr1 96870009 96872370 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03363 30 131 C3H Transcription Factor Family AT2G15530 47.619 9.40e-31 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03363 K19041 - gmx:100779069 150.214