Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03348 ATGACAATTCCAAGTAGGAACCGAAATAAACGATATGCTACTCTTCTTCTGAAAGGGGGATCCAAAGAATTTAATAGAGAAGGGGATTATGTTTTCTACCCTGGAGTTCAGTACATGATAAAGTTTTATAAGTTGGAAGCTATCCATACTGTCCACTTTACCTTTGCTGGGGCCAAGTTCTTTGACATTAAGATTCTAAATAAATATGATATGGAGATAAATTATCCAAAAAACGAAGGTTGGGATAATTTTGTACCCTTAGACTCCGACCATATTGAGGTAATAGAAGAGGTCGAAGAAGGATGGACTGTCAAAGTCACAAAAGCCATCGAAAGTGGAAGTAATCCATTGCCAATTCCTGCTAAAATTGTCCGAACATTGCTTAAAGAGAACCAACAAATGGTCTACATTTTTTATGAGGAATATGGAAATGCCTTTATTGTGGATCTGAGGCGTGGAAGAAGCAGAGGAGAATGCTACTTGACAATGGGATGGTATCAATATGTCAAAGACAAAAAACTGAAGGAGGGGGACACTTTGGAGTTCAAATTTAGGGATAGTCACAGAGACATTTATGCAAACATTATTAGGGGTTGA 597 0.3769 MTIPSRNRNKRYATLLLKGGSKEFNREGDYVFYPGVQYMIKFYKLEAIHTVHFTFAGAKFFDIKILNKYDMEINYPKNEGWDNFVPLDSDHIEVIEEVEEGWTVKVTKAIESGSNPLPIPAKIVRTLLKENQQMVYIFYEEYGNAFIVDLRRGRSRGECYLTMGWYQYVKDKKLKEGDTLEFKFRDSHRDIYANIIRG. 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03348 198 ProSiteProfiles B3 DNA-binding domain profile. 102 198 IPR003340 GO:0003677
Seca1g03348 198 Pfam B3 DNA binding domain 105 196 IPR003340 GO:0003677
Seca1g03348 198 SUPERFAMILY DNA-binding pseudobarrel domain 104 187 IPR015300 -
Seca1g03348 198 Gene3D - 89 197 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03348 Seca-Chr1 94330097 94331563 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca1g03348 B3 2e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03348 - K13738 mtr:120576122 53.9138