Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03344 ATGGAAGATCATGACCCCAATAGTCCAAGGCAAGGCTCCGAGAAAAGTGAACCAGTTAGGTCAAGGTGGACTCCAAAGCCAGAACAAATCCTCATACTCGAGTCCATCTTCAATAGTGGCATGGTCAATCCCCCAAAAGATGAAACCGTCAGAATAAGAAAACTCCTTGAGAAATTCGGCACCGTCGGTGATGCCAACGTCTTTTACTGGTTCCAAAACCGCCGCTCCAGATCTCGCCGCCGCCAACGCCAGCTCCAACAACAACAACAAGCCACCCTTAATCAACAAACAAACCACCACCAACCACCACCACCTCATCATCATCATCATCAAGTTGTTGAGAATGGTGCAATTTCTTATGATCAAACTCAAACCACCCCTTCTGTAGGAGCTATGAATATGGGTTTTGTTTCTTCCTCTTCTTCTTATAATTTCCCTCATGGTTCCTCTTCTTCTTCATGTGGTGGTGGTGGTGTTGTTCAACAAGGTGGCATGGATGGTTTCTTTTCAGTTTCTTCTCAAATGGGTTACCCTGGAATTGATCACTCATCAGCTGCATCATCATCAGTTTTGTACCCTCCTCTTGCTCCCAATTTGAACTACCACTCTGGATATGGGGGTGCTAATGCTTCAGGCTTCATCACTGTGTTTATCAATGGGATTGCAACAGAACTTCAAGGGGGCCCAATAGACATCAAAACAGTGTTTGGGGAAGATGTAATGTTAGTTCATTCCTCTGGAGTTCCTGTTCCCACAAATGAATTTGGGTTCTTGATGCAGAGCTTGCAGCATGGTGAAAGCTACTTTCTGGTATCAAAGGCGACACAGGTAGCCTAG 837 0.454 MEDHDPNSPRQGSEKSEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGTVGDANVFYWFQNRRSRSRRRQRQLQQQQQATLNQQTNHHQPPPPHHHHHQVVENGAISYDQTQTTPSVGAMNMGFVSSSSSYNFPHGSSSSSCGGGGVVQQGGMDGFFSVSSQMGYPGIDHSSAASSSVLYPPLAPNLNYHSGYGGANASGFITVFINGIATELQGGPIDIKTVFGEDVMLVHSSGVPVPTNEFGFLMQSLQHGESYFLVSKATQVA. 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03344 278 SMART HOX_1 18 85 IPR001356 GO:0003677
Seca1g03344 278 ProSiteProfiles 'Homeobox' domain profile. 16 81 IPR001356 GO:0003677
Seca1g03344 278 SUPERFAMILY Homeodomain-like 14 87 IPR009057 -
Seca1g03344 278 MobiDBLite consensus disorder prediction 1 22 - -
Seca1g03344 278 MobiDBLite consensus disorder prediction 75 110 - -
Seca1g03344 278 MobiDBLite consensus disorder prediction 83 101 - -
Seca1g03344 278 FunFam WUSCHEL-related homeobox 11 20 87 - -
Seca1g03344 278 PANTHER WUSCHEL-RELATED HOMEOBOX 11 3 274 IPR044558 GO:0003700|GO:0048830
Seca1g03344 278 MobiDBLite consensus disorder prediction 1 25 - -
Seca1g03344 278 Gene3D - 20 89 - -
Seca1g03344 278 Pfam Homeodomain 20 80 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03344 Seca-Chr1 93837459 93839416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03344 6 277 Wox Gene Family AT3G03660 52.878 1.96e-68 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Seca1g03344 Homeodomain 1.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03344 - - gmx:100791266 307.76