Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03343 ATGAGTTCACAGCATTTCAACAATGGTGGTGGTGGTGGTGGTGAAGGTTTCAGTGGAGACATGAGTTTTTTCCCTTCACCTCATGTTCCTTCTTCTCTTTTTGTGGGTTCTCAAGCTCCTCTTTTATGTAAGACTATAGGGGTTGTGGATCATGTTAATGGGGTAGAGGGTTGGAAGCATGAGATAGGACTTCAGATTTTGAGCCCCTCAATGTTCCAGTCTCAAGAGAACAGAGGAACAAAGAAAATCAATGATGGAGAAGATGGGTACTTTGGGGTTGAGAACAAGAATTTGTCTTTGAAACTTGGGGGTGAAGTTGAAGCTAAGAGCTCTGCTTCAGGGAAAATTGGATACACTAAGCTCTGTGCTAGGGGACACTGGAGGCCAGCTGAAGATGCACAACTTAAGGAGCTTGTTGCTCAATATGGTCCTCAAAATTGGAACTTGATTGCAGAGCATCTTGAAGGAAGATCAGGCAAAAGTTGCAGATTGAGGTGGTTCAATCAGCTAGATCCTAGAATCAACAAAAGGGCATTTTCTGAGGAGGAAGAGGAGAGGCTCTTAGCTGCTCATAAAATGTATGGTAACAAATGGGCTATAATTGCTAGACTCTTTCCTGGAAGGACAGATAATGCAGTGAAGAATCATTGGCATGTGATCATGGCTAGGAGGCACAGGGAGCAATCTAGTGTGTATAGAAGGAGAAAACCCACAGTTGGAAGCCTTCCAAAGGGTTTAAAATTGACTCTCTCAAACAATGCAGCAAGTGAATCAACCATCTCAAGCACCATAGATGAATCTGCCTCAACTTGCACTAACCTCTCCCTCACTCCCTCTTCAGCCAAACCAACTATTAGACCTTTTGATAAACTGGGTCAAGTTCAGAATCACCAAGGCTATGAATCACAAATGGGTCAATCTAGAGAAAGTGAGATGGTAACTGGGGATGTGAATTTTGACAATCTTGTTGGTGCTTGGAACAACACATGTAAACTTGAAGCTGTGGCAAAACCCATGGATGTGGAGCAGTCTAATTTTTCAGATTCAAACTCAGAAGTTTCAGTATCTGAATCAGTTGGCACCAATAGGTCCAGTTTCTCAATTTCTGGGGAAAGTGAAAAAGTGGGTTATAAGATTATTAACATGGCATTCATTGATTTTCTTGGAGTAGGAGCTACATAG 1182 0.423 MSSQHFNNGGGGGGEGFSGDMSFFPSPHVPSSLFVGSQAPLLCKTIGVVDHVNGVEGWKHEIGLQILSPSMFQSQENRGTKKINDGEDGYFGVENKNLSLKLGGEVEAKSSASGKIGYTKLCARGHWRPAEDAQLKELVAQYGPQNWNLIAEHLEGRSGKSCRLRWFNQLDPRINKRAFSEEEEERLLAAHKMYGNKWAIIARLFPGRTDNAVKNHWHVIMARRHREQSSVYRRRKPTVGSLPKGLKLTLSNNAASESTISSTIDESASTCTNLSLTPSSAKPTIRPFDKLGQVQNHQGYESQMGQSRESEMVTGDVNFDNLVGAWNNTCKLEAVAKPMDVEQSNFSDSNSEVSVSESVGTNRSSFSISGESEKVGYKIINMAFIDFLGVGAT. 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03343 393 Gene3D - 124 175 - -
Seca1g03343 393 ProSiteProfiles Myb-like domain profile. 124 170 IPR001005 -
Seca1g03343 393 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 124 170 IPR017930 -
Seca1g03343 393 SMART sant 123 172 IPR001005 -
Seca1g03343 393 SMART sant 175 223 IPR001005 -
Seca1g03343 393 CDD SANT 127 168 IPR001005 -
Seca1g03343 393 CDD SANT 187 218 IPR001005 -
Seca1g03343 393 Gene3D - 177 239 - -
Seca1g03343 393 Pfam Myb-like DNA-binding domain 176 219 IPR001005 -
Seca1g03343 393 Pfam Myb-like DNA-binding domain 124 170 IPR001005 -
Seca1g03343 393 PANTHER MYB PROTEIN-RELATED 124 273 - -
Seca1g03343 393 ProSiteProfiles Myb-like domain profile. 171 221 IPR001005 -
Seca1g03343 393 SUPERFAMILY Homeodomain-like 124 217 IPR009057 -
Seca1g03343 393 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 171 225 IPR017930 -
Seca1g03343 393 FunFam MYB transcription factor 177 245 - -
Seca1g03343 393 FunFam MYB transcription factor 124 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03343 Seca-Chr1 93788494 93791157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03343 104 393 MYB Transcription Factor Family AT5G17800 46.823 4.28e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca1g03343 Myb_DNA-binding 2.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03343 K09422 - gmx:100791795 446.047