Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03338 ATGGAAACAACTAAAAACCCCCTCCCTTCTCCTCCTCCTCCTCCTCAAACTAAAGTAAACAGAGTCCCAAGAAAAAGGAAGGTGTCACTAAAACTGATTGAGAATTCGAAAGTAAGAAAACGTTGTTACAAAAAAAGAACTGTGGGGTTGTTAAGGAAGATGGAGGAGCTTTCCGTACTTTGTGGTATCCCTACATGCTCAGTCATCTCTGGTCCAGGTGATACTAAGCCTAAAATATGGCCATCCCCTGAAGTGGCTAAACAACTACTACAGAGGCTTGAGGAAGTTCCAAAGGGTGTTAAGTCAAGAAAAGTGGTTACCCAATTGTCTTTTATGCGTGATAAGACAAAAAAGTTAGAAAATCAACTTGCCAGGCTTAAGGAGAGAAACAATGAGAAATATATGTCAATTTTAATGCATCAAATCCATCATGATGGTAAGTCTTTATCTGATTTTGAGCCTAATGATTTGAAGTGTTTACTTGGTTATGTGGAGCAAAAACTAAACAAAGTTAGAATGAGAACCAAGCATTTTAAGCAGGTGTTGCCTCCTAATCCTCCTCCTCCTCCTCCACCACCACCACCAGTGTCTTGTCCTCAAGAGAATGAGGTCCTAGAGAAACAATCATCCTTAGATTTGGTGAAAGAGGTTGATCAATTGAATAGTGGTTTTGATAATGATCATAATATAGGTAGTAGCAGCATGGGGCTACAACCACCACATGCAAATCTTAGCGATGTTGATAAGGTGTTGCCCCAAGAGAATTTTGTAGGTTTTAGTAATGTAAGTGATTTAGGGGTGTTTCCTCCAAGAAATTTTGGAGATCTCATTGGTGAAAATGACCTAGGGTCATATGTGTTCTCTTTTAGTTATTCTGGAGGCCTCATTAGTGAGAGTGACTCAAGGTTAGGGGCATTTCATCTAGAGAATTTTGGAGGTCTCATTGGTGAAAGTGATCACTTGGGGTCAGAGGTGTGGCCACCTCAAGGCAATTTCGGAGGTCTGAATGGTGAAAGTGACTCCGGGGTGTTACCGCAAGACAATTTTGGAGGTCTCAATGGTGAAAGTGATTTAGGAATGTTGCTTGAAGACAATTTTGAAGGTCTCACTGATGAAAGGGGTGATAGTTCACAGGTGTGGCCTGGAGGCAATATTGGAGATCTCAATGATGGAAGTGATCTCTTAGAGATGTATAATTTTGAAGGTCTCAATGGTGAAAGTGGTGATAGTTCACAGGTGTTTACTGAAGGCATTTTTGGAGATCTCAATGATGGAAGTTATCTCTTAAAGTTGTTGTTTGAAGGTAATTTTAAAGGTCTTAATGGTGAAAGTAATTCAGGGCTTCTGAATGGAAGCTCTATTGATGAAATTGGAGGCAGTAACATATGGCCATTTTATGGACATTTTGAAAGTACAATTGATGGAAGTTACATGGAAATAGAGCAACATAATGAAAATCACGGAGGGTTCATTAACAACTCTGGAACCAACACTCATGAAGCTGCCATGGGGAGATTCGATGCAAACTTTGTTGGCAATAACAATGGAAATAACTTGAATTTTGGATTGCCTACTCATGGAAATTTTGCTAGTAGCAGTGAATTTGGAAGTGATACTCAAGTGCCTACATCATTTGGAGGAAAGTTTCCTTGA 1653 0.3981 METTKNPLPSPPPPPQTKVNRVPRKRKVSLKLIENSKVRKRCYKKRTVGLLRKMEELSVLCGIPTCSVISGPGDTKPKIWPSPEVAKQLLQRLEEVPKGVKSRKVVTQLSFMRDKTKKLENQLARLKERNNEKYMSILMHQIHHDGKSLSDFEPNDLKCLLGYVEQKLNKVRMRTKHFKQVLPPNPPPPPPPPPPVSCPQENEVLEKQSSLDLVKEVDQLNSGFDNDHNIGSSSMGLQPPHANLSDVDKVLPQENFVGFSNVSDLGVFPPRNFGDLIGENDLGSYVFSFSYSGGLISESDSRLGAFHLENFGGLIGESDHLGSEVWPPQGNFGGLNGESDSGVLPQDNFGGLNGESDLGMLLEDNFEGLTDERGDSSQVWPGGNIGDLNDGSDLLEMYNFEGLNGESGDSSQVFTEGIFGDLNDGSYLLKLLFEGNFKGLNGESNSGLLNGSSIDEIGGSNIWPFYGHFESTIDGSYMEIEQHNENHGGFINNSGTNTHEAAMGRFDANFVGNNNGNNLNFGLPTHGNFASSSEFGSDTQVPTSFGGKFP. 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03338 550 PRINTS MADS domain signature 25 45 IPR002100 GO:0003677|GO:0046983
Seca1g03338 550 PRINTS MADS domain signature 45 60 IPR002100 GO:0003677|GO:0046983
Seca1g03338 550 ProSiteProfiles MADS-box domain profile. 23 69 IPR002100 GO:0003677|GO:0046983
Seca1g03338 550 SUPERFAMILY SRF-like 25 117 IPR036879 GO:0003677|GO:0046983
Seca1g03338 550 MobiDBLite consensus disorder prediction 181 199 - -
Seca1g03338 550 MobiDBLite consensus disorder prediction 1 19 - -
Seca1g03338 550 SUPERFAMILY Formin homology 2 domain (FH2 domain) 186 195 - -
Seca1g03338 550 SMART madsneu2 23 82 IPR002100 GO:0003677|GO:0046983
Seca1g03338 550 CDD MADS_SRF_like 25 106 IPR033897 GO:0000981|GO:0000987|GO:0045944
Seca1g03338 550 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 33 73 IPR002100 GO:0003677|GO:0046983
Seca1g03338 550 Coils Coil 109 136 - -
Seca1g03338 550 MobiDBLite consensus disorder prediction 179 200 - -
Seca1g03338 550 MobiDBLite consensus disorder prediction 1 25 - -
Seca1g03338 550 PANTHER SERUM RESPONSE FACTOR HOMOLOG 26 222 - -
Seca1g03338 550 Gene3D - 36 121 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03338 Seca-Chr1 93526917 93528569 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03338 26 166 MADS-box Gene Family AT5G26650 33.557 2.27e-21 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca1g03338 SRF-TF 5.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03338 - - gmx:106798339 215.312