LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca1g03338	ATGGAAACAACTAAAAACCCCCTCCCTTCTCCTCCTCCTCCTCCTCAAACTAAAGTAAACAGAGTCCCAAGAAAAAGGAAGGTGTCACTAAAACTGATTGAGAATTCGAAAGTAAGAAAACGTTGTTACAAAAAAAGAACTGTGGGGTTGTTAAGGAAGATGGAGGAGCTTTCCGTACTTTGTGGTATCCCTACATGCTCAGTCATCTCTGGTCCAGGTGATACTAAGCCTAAAATATGGCCATCCCCTGAAGTGGCTAAACAACTACTACAGAGGCTTGAGGAAGTTCCAAAGGGTGTTAAGTCAAGAAAAGTGGTTACCCAATTGTCTTTTATGCGTGATAAGACAAAAAAGTTAGAAAATCAACTTGCCAGGCTTAAGGAGAGAAACAATGAGAAATATATGTCAATTTTAATGCATCAAATCCATCATGATGGTAAGTCTTTATCTGATTTTGAGCCTAATGATTTGAAGTGTTTACTTGGTTATGTGGAGCAAAAACTAAACAAAGTTAGAATGAGAACCAAGCATTTTAAGCAGGTGTTGCCTCCTAATCCTCCTCCTCCTCCTCCACCACCACCACCAGTGTCTTGTCCTCAAGAGAATGAGGTCCTAGAGAAACAATCATCCTTAGATTTGGTGAAAGAGGTTGATCAATTGAATAGTGGTTTTGATAATGATCATAATATAGGTAGTAGCAGCATGGGGCTACAACCACCACATGCAAATCTTAGCGATGTTGATAAGGTGTTGCCCCAAGAGAATTTTGTAGGTTTTAGTAATGTAAGTGATTTAGGGGTGTTTCCTCCAAGAAATTTTGGAGATCTCATTGGTGAAAATGACCTAGGGTCATATGTGTTCTCTTTTAGTTATTCTGGAGGCCTCATTAGTGAGAGTGACTCAAGGTTAGGGGCATTTCATCTAGAGAATTTTGGAGGTCTCATTGGTGAAAGTGATCACTTGGGGTCAGAGGTGTGGCCACCTCAAGGCAATTTCGGAGGTCTGAATGGTGAAAGTGACTCCGGGGTGTTACCGCAAGACAATTTTGGAGGTCTCAATGGTGAAAGTGATTTAGGAATGTTGCTTGAAGACAATTTTGAAGGTCTCACTGATGAAAGGGGTGATAGTTCACAGGTGTGGCCTGGAGGCAATATTGGAGATCTCAATGATGGAAGTGATCTCTTAGAGATGTATAATTTTGAAGGTCTCAATGGTGAAAGTGGTGATAGTTCACAGGTGTTTACTGAAGGCATTTTTGGAGATCTCAATGATGGAAGTTATCTCTTAAAGTTGTTGTTTGAAGGTAATTTTAAAGGTCTTAATGGTGAAAGTAATTCAGGGCTTCTGAATGGAAGCTCTATTGATGAAATTGGAGGCAGTAACATATGGCCATTTTATGGACATTTTGAAAGTACAATTGATGGAAGTTACATGGAAATAGAGCAACATAATGAAAATCACGGAGGGTTCATTAACAACTCTGGAACCAACACTCATGAAGCTGCCATGGGGAGATTCGATGCAAACTTTGTTGGCAATAACAATGGAAATAACTTGAATTTTGGATTGCCTACTCATGGAAATTTTGCTAGTAGCAGTGAATTTGGAAGTGATACTCAAGTGCCTACATCATTTGGAGGAAAGTTTCCTTGA	1653	0.3981	METTKNPLPSPPPPPQTKVNRVPRKRKVSLKLIENSKVRKRCYKKRTVGLLRKMEELSVLCGIPTCSVISGPGDTKPKIWPSPEVAKQLLQRLEEVPKGVKSRKVVTQLSFMRDKTKKLENQLARLKERNNEKYMSILMHQIHHDGKSLSDFEPNDLKCLLGYVEQKLNKVRMRTKHFKQVLPPNPPPPPPPPPPVSCPQENEVLEKQSSLDLVKEVDQLNSGFDNDHNIGSSSMGLQPPHANLSDVDKVLPQENFVGFSNVSDLGVFPPRNFGDLIGENDLGSYVFSFSYSGGLISESDSRLGAFHLENFGGLIGESDHLGSEVWPPQGNFGGLNGESDSGVLPQDNFGGLNGESDLGMLLEDNFEGLTDERGDSSQVWPGGNIGDLNDGSDLLEMYNFEGLNGESGDSSQVFTEGIFGDLNDGSYLLKLLFEGNFKGLNGESNSGLLNGSSIDEIGGSNIWPFYGHFESTIDGSYMEIEQHNENHGGFINNSGTNTHEAAMGRFDANFVGNNNGNNLNFGLPTHGNFASSSEFGSDTQVPTSFGGKFP.	551

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Seca1g03338	550	PRINTS	MADS domain signature	25	45	IPR002100	GO:0003677\|GO:0046983
Seca1g03338	550	PRINTS	MADS domain signature	45	60	IPR002100	GO:0003677\|GO:0046983
Seca1g03338	550	ProSiteProfiles	MADS-box domain profile.	23	69	IPR002100	GO:0003677\|GO:0046983
Seca1g03338	550	SUPERFAMILY	SRF-like	25	117	IPR036879	GO:0003677\|GO:0046983
Seca1g03338	550	MobiDBLite	consensus disorder prediction	181	199	-	-
Seca1g03338	550	MobiDBLite	consensus disorder prediction	1	19	-	-
Seca1g03338	550	SUPERFAMILY	Formin homology 2 domain (FH2 domain)	186	195	-	-
Seca1g03338	550	SMART	madsneu2	23	82	IPR002100	GO:0003677\|GO:0046983
Seca1g03338	550	CDD	MADS_SRF_like	25	106	IPR033897	GO:0000981\|GO:0000987\|GO:0045944
Seca1g03338	550	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	33	73	IPR002100	GO:0003677\|GO:0046983

Showing 1 to 10 of 15 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca1g03338	Seca-Chr1	93526917	93528569	Tandem

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca1g03338	26	166	MADS-box Gene Family	AT5G26650	33.557	2.27e-21	94.4

Showing 1 to 1 of 1 entries

Previous1Next

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-M-type	Seca1g03338		SRF-TF	5.3e-10	No_clan

Showing 1 to 1 of 1 entries

Previous1Next

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca1g03338	-		-	gmx:106798339	215.312

Showing 1 to 1 of 1 entries

Previous1Next