Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03337 ATGAAAACAACTAAAAACACCCTCCCTCCTCCTCCTCCTCCTCCCCCTCCTCCTTCTCCTCAAACTAAAGTAAACAGAGTCCCAAGAAAAAGGAAGGTGTCACTAAAACTGATTGAGAATTCAAAAGTAAGAAAACGTTGTTACAAAAAAAGAACTGTGGGGTTGTTAAGGAAGATAGAGGAGCTTTCCATACTTTGTGGTATCCCTACATGCTCAGTCATCTCTGGTCCAGGTGATACTAAGCCTAAAATATGGCCATCCTCTGAAGTGGCTAAACAACTACTACAGAGGCTTGAGGAAGTTCCAAAGGGTGTTAAGTCAAGAAAAGTGGTTACCCAATTGTCTTTTATGCGTGATAAGACAAAAAAGTTAGAAAATCAACTTGTCAGGCTTAAGGAGAGAAACAATGAGAAATATATGTCAATTTTAATGCATCAAATACATCATGATGGTAAGTCTTTATCTGATTTCGAGCCTAATGATTTGAAGTGTTTACTTGGTTATGTGGAGCAAAAACTGAACAAAGTTAGAATGAGAACCAAGCATTTTAAGCAGGTGTTGCCTCCTAATCCTCCTCCTCCTCCTCCACCACCAGTGTCTTGTCCTCAAGAGAATGAGGTCCTAGAGAAACAATCATCCTTAGATTTGGTGAAAGAGGTTGATCAATTGAATAGTGGTTTTGATAATGATAATAATATAGGTAGTAGCAGCATGGGGCTACAACCACCACATGCAAATCTTAGCGATGTTGATAAGGTGTTTCCCCAAGAGAATTTTGTAGGTTTTAATAATGTAAGTGATTTAGGGGTGTTTCCTCCAAGCAATTTTGGAGATCTCATTGGTGAAAATGACCTAGGGTCAGATGTGTTCTCTCTTAGTTATTTTGGAGGCCTCATTAGTGAGAGTGACTCAAGGTTAGGGGCATTTCGTCTAGAGAATTTTGGAGGTCTCATTGGTGAAAGTGATCACTTGGGGTCAGAGGTGTGGCCACCTCAAGGCAATTTTGGAGGTCTGAATGGTGAAAGTGACTCCGGGGTGTTACCACAAGACAATTTTGGAGGTCTCAATAGTGAAAGTGATTTAGGAATGTTGCTTAAAGACAATTTTGAAGGTCTCACTGGTGAAAGGGGTGATAGTTCACAGGTGTGGCCTGGAGGCAATTTTGGAGATCTCAATGATGGAAATGATCTCTTAGAGATGTATAATTTTGAAGGTCTCAATGGTGAAAGTGGTGATAGTTCACAGGTGTTTCCTGAAGGCAATTTTGGAGATCTCAATGATGGAAGTTATCTCTTAAAGTTGTTTGAAGGTAATTTTCAAGGTCTCAATGGTGAAAGTAATTCAGGGCTTCTGAATGGAATCTCTATTGATGATATTAGAGGCAGTAACATATGGCCATCTTATGGACATTTTGAAAGTACAATTGATGGAAGTTACATGGAAATAGAGCAACATAATGAAAATCAAGGAGGGTTCATTAACAATTCTGGAGCCAACACTCATGAAGCCGCCATGGGGAGATTTGATGCAAACTTTGTTGGCAATAACAATGGAAATAACTTGAATTTTGGATTGCCTACTCATGGAAATTTTGCTAGTAGAGGTGAATTTGGAAGTGATTCTCAAGTGCCTACATCATTTGGAGGAAAGTTTCCTTGA 1659 0.3948 MKTTKNTLPPPPPPPPPPSPQTKVNRVPRKRKVSLKLIENSKVRKRCYKKRTVGLLRKIEELSILCGIPTCSVISGPGDTKPKIWPSSEVAKQLLQRLEEVPKGVKSRKVVTQLSFMRDKTKKLENQLVRLKERNNEKYMSILMHQIHHDGKSLSDFEPNDLKCLLGYVEQKLNKVRMRTKHFKQVLPPNPPPPPPPPVSCPQENEVLEKQSSLDLVKEVDQLNSGFDNDNNIGSSSMGLQPPHANLSDVDKVFPQENFVGFNNVSDLGVFPPSNFGDLIGENDLGSDVFSLSYFGGLISESDSRLGAFRLENFGGLIGESDHLGSEVWPPQGNFGGLNGESDSGVLPQDNFGGLNSESDLGMLLKDNFEGLTGERGDSSQVWPGGNFGDLNDGNDLLEMYNFEGLNGESGDSSQVFPEGNFGDLNDGSYLLKLFEGNFQGLNGESNSGLLNGISIDDIRGSNIWPSYGHFESTIDGSYMEIEQHNENQGGFINNSGANTHEAAMGRFDANFVGNNNGNNLNFGLPTHGNFASRGEFGSDSQVPTSFGGKFP. 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03337 552 SMART madsneu2 28 87 IPR002100 GO:0003677|GO:0046983
Seca1g03337 552 Gene3D - 41 124 IPR036879 GO:0003677|GO:0046983
Seca1g03337 552 PRINTS MADS domain signature 50 65 IPR002100 GO:0003677|GO:0046983
Seca1g03337 552 PRINTS MADS domain signature 30 50 IPR002100 GO:0003677|GO:0046983
Seca1g03337 552 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 38 78 IPR002100 GO:0003677|GO:0046983
Seca1g03337 552 ProSiteProfiles MADS-box domain profile. 28 74 IPR002100 GO:0003677|GO:0046983
Seca1g03337 552 MobiDBLite consensus disorder prediction 1 29 - -
Seca1g03337 552 Coils Coil 114 134 - -
Seca1g03337 552 MobiDBLite consensus disorder prediction 1 23 - -
Seca1g03337 552 PANTHER SERUM RESPONSE FACTOR HOMOLOG 31 231 - -
Seca1g03337 552 SUPERFAMILY SRF-like 30 122 IPR036879 GO:0003677|GO:0046983
Seca1g03337 552 CDD MADS_SRF_like 30 111 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03337 Seca-Chr1 93499952 93501610 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03337 31 171 MADS-box Gene Family AT5G26650 33.557 3.44e-21 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca1g03337 SRF-TF 9.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03337 - - gmx:106798339 226.483