Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03336 ATGGAAACAACTAAAAACACCCTCCCTCCTCCTCCTCCTCCTCAAACTAAAATAAACAGAGTCCCAAGAAAAAGGAAGGTGTCACTAAAACTGATTGAGAATTCGAAAGTAAGAAAACGTTGTTACAAAAAAAGAACTGTGGGGTTGTTAAGGAAGATAGAGGAGCTTTCCATACTTTGTGGTATCCCTACATGCTCAGTCATCTCTGGTCCAGGTGATACTAAGCCTAAAATATGGCCATCCCCTGAAGTGGCTAAACAACTACTACAGAGGCTTGAGGAAGTTCCAAAGGGTGTTAAGTCAAGAAAAGTGGTTACCCAATTGTCTTTTATGCGTGATAAGACAAAAAAGTTAGAAAATCAACTTGCCAGGCTTAAGGAGAGAAACAATGAGAAATATATGTCAATTTTAATGCATCAAATCCATCATGATGGTAAGTCTTTATCTGATTTCGAGCCTAATGATTTGAAGTGTTTACTTGGTTATGTGGAGCAAAAACTGAACAAAGTTAGAATGAGAACCAAGCATTTTAAGCAGGTGTTGCCTCCTAATCCTCCTCCTCCTCCTCCTCCACCACCACCAGTGTCTTGTCCTCAAGAGAATGAGGTCCCAGAGAAACAATCAACCTTAGATTTGGTGAAAGAGGTTGATCAATTGAATAGTGGTTTTAATAATGATAATAATCTAGGTAGTAGCAACATAGGGCTACAACCACCACATGACAATCTTAGTGATGTTGATAAGGTGTTGCCCCAAGAGAATTTTGGAGGTTTCAATAATGTAAGTGATTTATGGGTGTTTCCTCCAAGCAATTTTGGAGATCTCATTGGTGAAAATGACCTAGGGTCAGATGTGTTCTCTCTTAGTTATTTTGGAGGCCTCATTAGTGAGAGTGACTCAAGGTTAGGGGCATTTCGTCCAGAGAATTTTGGAGGTCTCATTGGTGAAAGTGATCACTTGGGGTCAGAGGTGTGGCCACCTCAAGGCAATTTTGGAGATCTCAATGGTGAAAGTGACTTCGGGGTGTTACCGCAAGACAATTTTGGAGGTCTCAATGGTGAAAGTGATTTAGGAATGTTGCTTGAAGACAATTTTGAAGGTCTCACTGGTGAAAGGGGTGATAGTTCACAGGTGTGGCCTGGAGGCAATTTTGGAGATCTCAATGATGGAAATGATCTCTTAGAGATGTATAATTTTGAAGGTCTCAATGGTGAAAGTGGTGATAGTTCACAGGTGTTTCCTGAAGGCAATTTTGGAGATCTCAATGATGGAAGTTATCTCTTAAAGATGTTCGAAGGTAATTTTCAAGGTCTCAATGGTGAAAGTAATTTAGGGCTTCTGAATGGAAGCTCTATTGATGAAATTGGAGGCAGTAACATATGGCCATCTTATGGACATTTTGAAAGTACAATTGATGGAAGTTACATGGAAATAGAGCAACATAATGAAAATCAAGGAGGGTTCATTAACAACTCTGGAGCCAACACTCATGAAGCTGCCATGGGGAGATTCGATGCAAAGTTTGTTGGCAATAACAATGGAAATAACTTGAATTTTGGATTGCCTACTCGTGGAAATTTTGCTAGTAGCGGTGAATTTGGAAGTGATACTCAAGTGCCTACATCATTTAGAGGAAAGTTTCCTTGA 1647 0.3989 METTKNTLPPPPPPQTKINRVPRKRKVSLKLIENSKVRKRCYKKRTVGLLRKIEELSILCGIPTCSVISGPGDTKPKIWPSPEVAKQLLQRLEEVPKGVKSRKVVTQLSFMRDKTKKLENQLARLKERNNEKYMSILMHQIHHDGKSLSDFEPNDLKCLLGYVEQKLNKVRMRTKHFKQVLPPNPPPPPPPPPPVSCPQENEVPEKQSTLDLVKEVDQLNSGFNNDNNLGSSNIGLQPPHDNLSDVDKVLPQENFGGFNNVSDLWVFPPSNFGDLIGENDLGSDVFSLSYFGGLISESDSRLGAFRPENFGGLIGESDHLGSEVWPPQGNFGDLNGESDFGVLPQDNFGGLNGESDLGMLLEDNFEGLTGERGDSSQVWPGGNFGDLNDGNDLLEMYNFEGLNGESGDSSQVFPEGNFGDLNDGSYLLKMFEGNFQGLNGESNLGLLNGSSIDEIGGSNIWPSYGHFESTIDGSYMEIEQHNENQGGFINNSGANTHEAAMGRFDAKFVGNNNGNNLNFGLPTRGNFASSGEFGSDTQVPTSFRGKFP. 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03336 548 ProSiteProfiles MADS-box domain profile. 22 68 IPR002100 GO:0003677|GO:0046983
Seca1g03336 548 SMART madsneu2 22 81 IPR002100 GO:0003677|GO:0046983
Seca1g03336 548 MobiDBLite consensus disorder prediction 180 199 - -
Seca1g03336 548 Coils Coil 108 135 - -
Seca1g03336 548 PRINTS MADS domain signature 44 59 IPR002100 GO:0003677|GO:0046983
Seca1g03336 548 PRINTS MADS domain signature 24 44 IPR002100 GO:0003677|GO:0046983
Seca1g03336 548 PANTHER SERUM RESPONSE FACTOR HOMOLOG 25 221 - -
Seca1g03336 548 SUPERFAMILY Formin homology 2 domain (FH2 domain) 185 464 - -
Seca1g03336 548 Gene3D - 35 120 IPR036879 GO:0003677|GO:0046983
Seca1g03336 548 SUPERFAMILY SRF-like 24 116 IPR036879 GO:0003677|GO:0046983
Seca1g03336 548 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 32 72 IPR002100 GO:0003677|GO:0046983
Seca1g03336 548 MobiDBLite consensus disorder prediction 178 207 - -
Seca1g03336 548 CDD MADS_SRF_like 24 105 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03336 Seca-Chr1 93388619 93390265 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03336 24 270 Type I MADS-box Gene Family AT2G40210 29.555 1.58e-22 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca1g03336 SRF-TF 9.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03336 - - gmx:106798339 221.861