Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03333 ATGGATTTTTTACAAACGCCAGAGAATCAGATACTTGTGGGTGTGGCAGTGGCTCTTGTAGCCGTTGGGGTTGGTGCTGTCTACCTCTATTCATCTAAGAAGCGCAAAGGTTGCTTGGACCCGGAGAATTTCAAGGAGTTTAAACTTGTCAAGCGAACACAGCTGAGCCATAATGTTGCAAAGTTCACATTTGAACTCCCAACACCTACTTCTGTTTTGGGTCTTCCAATTGGCCAACACATAAGTTGCAGCAGGGGTAAGGATGGTCAAGGTGAAGAGGTTATCAAACCATATACCCCAACAACTTTGGATTCTGATGTTGGATATTTCGAACTGGTTATTAAGATGTACCCACAAGGAAGGATGTCACACCATTTCCGTGAGATGCGTGTTGGTGACTATCTTGCTGTCAAAGGACCCAAGGGACGTTTCAAGTACCAACCTGGTGAGGTTAGAGCATTTGGGATGCTTGCTGGAGGGTCCGGAATCACTCCAATGTTCCAAGTTGCTAGAGCTATATTAGAAAACCCAAAAGACAGGACCAAGGTGCATCTTATCTATGCCAATGTTACATATGAGGACATTCTTCTGAAGGAAGAACTTCAAGGTCTTGCTACTAACTATCCGGATCAGTTCAAAGTATACTATGTGTTAAATCAGGTTAGTTGCTATGACATGCAAAACTATAATTTTCTTCTTATCTTTTGCATTTGTTGA 717 0.4254 MDFLQTPENQILVGVAVALVAVGVGAVYLYSSKKRKGCLDPENFKEFKLVKRTQLSHNVAKFTFELPTPTSVLGLPIGQHISCSRGKDGQGEEVIKPYTPTTLDSDVGYFELVIKMYPQGRMSHHFREMRVGDYLAVKGPKGRFKYQPGEVRAFGMLAGGSGITPMFQVARAILENPKDRTKVHLIYANVTYEDILLKEELQGLATNYPDQFKVYYVLNQVSCYDMQNYNFLLIFCIC. 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03333 238 FunFam NADH-cytochrome b5 reductase 137 229 - -
Seca1g03333 238 SUPERFAMILY Riboflavin synthase domain-like 38 148 IPR017938 -
Seca1g03333 238 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 42 147 IPR017927 GO:0016491
Seca1g03333 238 Gene3D Translation factors 37 139 - -
Seca1g03333 238 Pfam Oxidoreductase NAD-binding domain 156 220 IPR001433 GO:0016491
Seca1g03333 238 Pfam Oxidoreductase FAD-binding domain 47 146 IPR008333 -
Seca1g03333 238 CDD cyt_b5_reduct_like 47 220 - -
Seca1g03333 238 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 135 221 IPR039261 -
Seca1g03333 238 PRINTS Cytochrome B5 reductase signature 155 174 - -
Seca1g03333 238 PRINTS Cytochrome B5 reductase signature 132 146 - -
Seca1g03333 238 PRINTS Cytochrome B5 reductase signature 73 84 - -
Seca1g03333 238 PRINTS Cytochrome B5 reductase signature 96 103 - -
Seca1g03333 238 PRINTS Cytochrome B5 reductase signature 193 204 - -
Seca1g03333 238 Gene3D - 140 230 IPR039261 -
Seca1g03333 238 FunFam NADH-cytochrome b5 reductase 37 137 - -
Seca1g03333 238 PANTHER NADH-CYTOCHROME B5 REDUCTASE 33 222 IPR001834 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03333 Seca-Chr1 93272161 93278043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03333 2 220 NADPH P450 reductases AT5G17770 85.909 2.95e-128 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03333 K00326 - gmx:100816447 395.971