Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03322 ATGGGGAGGCCTCCTTGCTGTGACAAAGTTGGCATCAAGAAGGGTCCATGGACACCTGAAGAAGATATCATCCTTGTCTCTTACATCCAAGAACATGGTCCAGGAAATTGGAGATCAGTGCCTACTAATACTGGGTTGTCAAGGTGCAGCAAAAGTTGCAGGCTTAGATGGACAAATTACCTGAGGCCAGGAATCAAGAGAGGGAACTTCACTCCACATGAGGAAGGGATGATAATTCATTTGCAAGCTCTACTGGGTAACAAATGGGCAGCCATAGCTTCCTATCTTCCACAAAGAACAGATAATGACATAAAGAATTATTGGAACACACATCTAAAGAAGAAGCTGAAGAAATTTCAAGCAGCCTTAGAGCCACACCAAGCATCAGATTCAACAACAACAACAACAACCAATACTAGTTCTGGTCAGTATCTATCAAAGAGCTTTAGTGACAGAAGTTTAGATATCAGCTGTAGCAACAACAACCATGCCTCATCTCTTGGACTTAGTCATTCTTCTCAGTCCTCAACATATGCTTCAAGCACTGAGAATATCTCAAGGCTTTTAGAAGGTTGGATGAGATCTTCTCCAAATCCACTCAAAGGAACCACTCACCAAGATGAAGAAGAAGAAGAAGAAGAGAATAATGGGAATAAGCTAGTGAAATCTGCTTCAGTTCCTGCTGCTTTAAACCTTCAGATTCAGCACAAAATAATGACCAAAGATGAGGGTGGTGGAGGAGATTTAGTGTCTCATGAAGAGTTTGATTCTATTCTGTCATTTGAGAACCTTAACAATGCTGCTTGGGACAAGTCAACTTGTGATTCAATGCCTGAAAAGTGTTCTGAAGCTGTGGACAAGAACAATAATAGGCAGAAATCTGAGAATAGTTGTGCTCCTCCATTGTCATTTCTTGAGAAGTGGTTGTTGGATGAAAATGTTGGTCAAGTGGAGGAGATGATGGAATTAGCTCCTATGTTCTAA 984 0.4116 MGRPPCCDKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLSRCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLKKFQAALEPHQASDSTTTTTTNTSSGQYLSKSFSDRSLDISCSNNNHASSLGLSHSSQSSTYASSTENISRLLEGWMRSSPNPLKGTTHQDEEEEEEENNGNKLVKSASVPAALNLQIQHKIMTKDEGGGGDLVSHEEFDSILSFENLNNAAWDKSTCDSMPEKCSEAVDKNNNRQKSENSCAPPLSFLEKWLLDENVGQVEEMMELAPMF. 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03322 327 Gene3D - 68 141 - -
Seca1g03322 327 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca1g03322 327 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Seca1g03322 327 FunFam MYB-related transcription factor 13 66 - -
Seca1g03322 327 CDD SANT 69 112 IPR001005 -
Seca1g03322 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Seca1g03322 327 CDD SANT 16 61 IPR001005 -
Seca1g03322 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Seca1g03322 327 FunFam Transcription factor MYB60 68 140 - -
Seca1g03322 327 MobiDBLite consensus disorder prediction 125 144 - -
Seca1g03322 327 MobiDBLite consensus disorder prediction 192 220 - -
Seca1g03322 327 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Seca1g03322 327 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca1g03322 327 SMART sant 66 114 IPR001005 -
Seca1g03322 327 SMART sant 13 63 IPR001005 -
Seca1g03322 327 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 223 - -
Seca1g03322 327 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca1g03322 327 Gene3D - 13 66 - -
Seca1g03322 327 MobiDBLite consensus disorder prediction 123 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03322 Seca-Chr1 93011458 93013144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03322 1 324 MYB Transcription Factor Family AT5G62470 43.501 3.04e-84 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca1g03322 Myb_DNA-binding 1.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03322 K09422 - gmx:100817854 469.544