Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03297 ATGAGTTTTCTCAACTCTCTTGCTGGCCGCTCACCACGTTTCAAGAAATCCAAGAAAAAGTCTCGCTGCTCTGTCAAGAAATCGTCTGCGACTTCGTTTTCTTGTTTGCTCACTACTGATTCTACTTCTCCTGCTGCTACAATTACCACCACTCCATTCCCATCAGGATCTATCGCTGCTTCATCCTCTGCTGGTGCTTTAATTGCCAAGACTGTGAGCACTGAAGCTGTTGATGAAAAGCAGGTTGAGGAAACGTGTTCTGTGCCTTGCACTGCAGCACCGTCTTCTACGGTAATTTCCACTACTTCTACTTTTAATTTGTTCTTTGTTCCTGAAACTCACAAAGATTGTATAACAAAATTGGAGTGGAAACCATCACCTAATCCCTTTCTTTTTGGGAGCTTCGAATCACTAAATTGTTTAGAGGAGGAGAAAGTTTCTCTGGATCGAAAACTGAAGATCCATGAAACGTTTGGTGACGATGAAGTTTTTAAGATGCATGATGTCCCTGTTTTGAACAAGCTCACAATTTTCGACTATGACAAAGACCTTGTCACATGGAACGCCTTTCTTTCTGCCTATGCTAGAGAACTTGACATCGACAAAACCAAAGAGGGCTCTCATCTTTTTCGTCTTCTTCGTCATTCCTTCGTTCTCAGCACTCGTCACACTTGGTCTCCTCTTTTCAAAACGTGCCTCCTCTCCGCTTCTCCCTCGGCTTCTGGGATGCTTCATGATTATGTCGTCAAGATTAGGTCGCAATGGAATATGTTTGTTGCTGGGGCTTTGGTCAATATTTACGCAATCGGAGAGGCCCGCGTTTTGTTTGATGGAATGCCTGTGAGGGATGTGGTGCTCTGGAATGTGATGATAAAGGTCTATGTGGAAATGGATCATGTTCTCTGTGTAGATGCTGCAATGCAGTTTGCTGAATCATGTTCAGTTTGCAAGGCATTTTGCAATATGGATGCATTGTTCTCTTTGCAGAGTTGCTTGACAGGATCAGTTGGGATTCATCTCCCTCATGGCTTGTGGTCACAATGTTTTGATCAAGTGATCTTTACTTGGCTTGATGACTTGCTTGAAATTTTAAAGCATTTTGATTTTTTACCAAAAAAAATTCAAGAACAGTTAATGTTTGAAAGATATCCTCATGGAAATCCTTTTGAGGCCATCACTGGTTATGGTCTTGGTGTTGTCCTGGTTACATTGGCAGCTATTAGTGTTGCTGGCTTGGGTTTCTTAGTGTCTTCTCTCTACTCTAATGTCATCATCATGAACCACCCTGGCCAGATTGGAAATGGTTATGCTCCTGTACTTGACTGCCACACATCTCACATTGTTGTCAAGTTTGCTGAACTTGTGACCAAGATTGACAGACGATCTGGTAAGGAGCTTGAGAAGGAGCCCAAATTCTTGAAAAATGGAGATGCAGTTTTTGTCAAGACGATTCCCACCAAGCCCATGGTGGTTGAAACTTTCTCTGAGTATCCTCCTCATGGTCGATTTGCTGTGAGGGACATGCGTCAAACTGTTGTTGTGGGAGTCATCAAGAATATGAAGAAGAAGGACCCTACCGGAGCCAAGGTCACTAAGGCTGCACAGAAAAAGAAGCAAATGCAACAGCTGTTCCTATTGAATCTTGTTTCTGGTGCTTCAAGAATCATTGGAGTTGACTTAGTTTCCAGCCGATTTGAACTAGCTAAAAAGTTTGGGGTTAATGAGTTTGTCAACCCAAAAGATCATGACAAACCTGTACAACAGGTGATTGCTGAAATGACCAATGGAGGTGTGGATCGTGTTGTTGAATGTACTGGCAGCATCCAGGCCATGATCTCAACATTTGAATGTGTCCATGATGGTTGGGGTGTTGCTGTACTTGTTGGTGTGGCTGCTTGA 1899 0.4302 MSFLNSLAGRSPRFKKSKKKSRCSVKKSSATSFSCLLTTDSTSPAATITTTPFPSGSIAASSSAGALIAKTVSTEAVDEKQVEETCSVPCTAAPSSTVISTTSTFNLFFVPETHKDCITKLEWKPSPNPFLFGSFESLNCLEEEKVSLDRKLKIHETFGDDEVFKMHDVPVLNKLTIFDYDKDLVTWNAFLSAYARELDIDKTKEGSHLFRLLRHSFVLSTRHTWSPLFKTCLLSASPSASGMLHDYVVKIRSQWNMFVAGALVNIYAIGEARVLFDGMPVRDVVLWNVMIKVYVEMDHVLCVDAAMQFAESCSVCKAFCNMDALFSLQSCLTGSVGIHLPHGLWSQCFDQVIFTWLDDLLEILKHFDFLPKKIQEQLMFERYPHGNPFEAITGYGLGVVLVTLAAISVAGLGFLVSSLYSNVIIMNHPGQIGNGYAPVLDCHTSHIVVKFAELVTKIDRRSGKELEKEPKFLKNGDAVFVKTIPTKPMVVETFSEYPPHGRFAVRDMRQTVVVGVIKNMKKKDPTGAKVTKAAQKKKQMQQLFLLNLVSGASRIIGVDLVSSRFELAKKFGVNEFVNPKDHDKPVQQVIAEMTNGGVDRVVECTGSIQAMISTFECVHDGWGVAVLVGVAA. 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03297 632 FunFam Elongation factor 1-alpha 415 521 - -
Seca1g03297 632 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 418 520 IPR009001 -
Seca1g03297 632 PANTHER ELONGATION FACTOR 1 ALPHA 420 540 - -
Seca1g03297 632 MobiDBLite consensus disorder prediction 1 20 - -
Seca1g03297 632 Pfam Zinc-binding dehydrogenase 550 630 IPR013149 -
Seca1g03297 632 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 549 630 IPR036291 -
Seca1g03297 632 Gene3D - 544 632 - -
Seca1g03297 632 FunFam S-(hydroxymethyl)glutathione dehydrogenase 547 632 - -
Seca1g03297 632 Gene3D Tetratricopeptide repeat domain 171 336 IPR011990 GO:0005515
Seca1g03297 632 CDD EF1_alpha_III 423 517 - -
Seca1g03297 632 Gene3D Translation factors 416 520 - -
Seca1g03297 632 Pfam Elongation factor Tu C-terminal domain 418 520 IPR004160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03297 Seca-Chr1 92318616 92320641 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03297 408 531 Eukaryotic Initiation Factors Gene Family AT1G07930 78.226 1.06e-59 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03297 K03231 - osa:4331813 201.83