Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca1g03297 | ATGAGTTTTCTCAACTCTCTTGCTGGCCGCTCACCACGTTTCAAGAAATCCAAGAAAAAGTCTCGCTGCTCTGTCAAGAAATCGTCTGCGACTTCGTTTTCTTGTTTGCTCACTACTGATTCTACTTCTCCTGCTGCTACAATTACCACCACTCCATTCCCATCAGGATCTATCGCTGCTTCATCCTCTGCTGGTGCTTTAATTGCCAAGACTGTGAGCACTGAAGCTGTTGATGAAAAGCAGGTTGAGGAAACGTGTTCTGTGCCTTGCACTGCAGCACCGTCTTCTACGGTAATTTCCACTACTTCTACTTTTAATTTGTTCTTTGTTCCTGAAACTCACAAAGATTGTATAACAAAATTGGAGTGGAAACCATCACCTAATCCCTTTCTTTTTGGGAGCTTCGAATCACTAAATTGTTTAGAGGAGGAGAAAGTTTCTCTGGATCGAAAACTGAAGATCCATGAAACGTTTGGTGACGATGAAGTTTTTAAGATGCATGATGTCCCTGTTTTGAACAAGCTCACAATTTTCGACTATGACAAAGACCTTGTCACATGGAACGCCTTTCTTTCTGCCTATGCTAGAGAACTTGACATCGACAAAACCAAAGAGGGCTCTCATCTTTTTCGTCTTCTTCGTCATTCCTTCGTTCTCAGCACTCGTCACACTTGGTCTCCTCTTTTCAAAACGTGCCTCCTCTCCGCTTCTCCCTCGGCTTCTGGGATGCTTCATGATTATGTCGTCAAGATTAGGTCGCAATGGAATATGTTTGTTGCTGGGGCTTTGGTCAATATTTACGCAATCGGAGAGGCCCGCGTTTTGTTTGATGGAATGCCTGTGAGGGATGTGGTGCTCTGGAATGTGATGATAAAGGTCTATGTGGAAATGGATCATGTTCTCTGTGTAGATGCTGCAATGCAGTTTGCTGAATCATGTTCAGTTTGCAAGGCATTTTGCAATATGGATGCATTGTTCTCTTTGCAGAGTTGCTTGACAGGATCAGTTGGGATTCATCTCCCTCATGGCTTGTGGTCACAATGTTTTGATCAAGTGATCTTTACTTGGCTTGATGACTTGCTTGAAATTTTAAAGCATTTTGATTTTTTACCAAAAAAAATTCAAGAACAGTTAATGTTTGAAAGATATCCTCATGGAAATCCTTTTGAGGCCATCACTGGTTATGGTCTTGGTGTTGTCCTGGTTACATTGGCAGCTATTAGTGTTGCTGGCTTGGGTTTCTTAGTGTCTTCTCTCTACTCTAATGTCATCATCATGAACCACCCTGGCCAGATTGGAAATGGTTATGCTCCTGTACTTGACTGCCACACATCTCACATTGTTGTCAAGTTTGCTGAACTTGTGACCAAGATTGACAGACGATCTGGTAAGGAGCTTGAGAAGGAGCCCAAATTCTTGAAAAATGGAGATGCAGTTTTTGTCAAGACGATTCCCACCAAGCCCATGGTGGTTGAAACTTTCTCTGAGTATCCTCCTCATGGTCGATTTGCTGTGAGGGACATGCGTCAAACTGTTGTTGTGGGAGTCATCAAGAATATGAAGAAGAAGGACCCTACCGGAGCCAAGGTCACTAAGGCTGCACAGAAAAAGAAGCAAATGCAACAGCTGTTCCTATTGAATCTTGTTTCTGGTGCTTCAAGAATCATTGGAGTTGACTTAGTTTCCAGCCGATTTGAACTAGCTAAAAAGTTTGGGGTTAATGAGTTTGTCAACCCAAAAGATCATGACAAACCTGTACAACAGGTGATTGCTGAAATGACCAATGGAGGTGTGGATCGTGTTGTTGAATGTACTGGCAGCATCCAGGCCATGATCTCAACATTTGAATGTGTCCATGATGGTTGGGGTGTTGCTGTACTTGTTGGTGTGGCTGCTTGA | 1899 | 0.4302 | MSFLNSLAGRSPRFKKSKKKSRCSVKKSSATSFSCLLTTDSTSPAATITTTPFPSGSIAASSSAGALIAKTVSTEAVDEKQVEETCSVPCTAAPSSTVISTTSTFNLFFVPETHKDCITKLEWKPSPNPFLFGSFESLNCLEEEKVSLDRKLKIHETFGDDEVFKMHDVPVLNKLTIFDYDKDLVTWNAFLSAYARELDIDKTKEGSHLFRLLRHSFVLSTRHTWSPLFKTCLLSASPSASGMLHDYVVKIRSQWNMFVAGALVNIYAIGEARVLFDGMPVRDVVLWNVMIKVYVEMDHVLCVDAAMQFAESCSVCKAFCNMDALFSLQSCLTGSVGIHLPHGLWSQCFDQVIFTWLDDLLEILKHFDFLPKKIQEQLMFERYPHGNPFEAITGYGLGVVLVTLAAISVAGLGFLVSSLYSNVIIMNHPGQIGNGYAPVLDCHTSHIVVKFAELVTKIDRRSGKELEKEPKFLKNGDAVFVKTIPTKPMVVETFSEYPPHGRFAVRDMRQTVVVGVIKNMKKKDPTGAKVTKAAQKKKQMQQLFLLNLVSGASRIIGVDLVSSRFELAKKFGVNEFVNPKDHDKPVQQVIAEMTNGGVDRVVECTGSIQAMISTFECVHDGWGVAVLVGVAA. | 633 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca1g03297 | 632 | FunFam | Elongation factor 1-alpha | 415 | 521 | - | - | |
Seca1g03297 | 632 | SUPERFAMILY | EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain | 418 | 520 | IPR009001 | - | |
Seca1g03297 | 632 | PANTHER | ELONGATION FACTOR 1 ALPHA | 420 | 540 | - | - | |
Seca1g03297 | 632 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Seca1g03297 | 632 | Pfam | Zinc-binding dehydrogenase | 550 | 630 | IPR013149 | - | |
Seca1g03297 | 632 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 549 | 630 | IPR036291 | - | |
Seca1g03297 | 632 | Gene3D | - | 544 | 632 | - | - | |
Seca1g03297 | 632 | FunFam | S-(hydroxymethyl)glutathione dehydrogenase | 547 | 632 | - | - | |
Seca1g03297 | 632 | Gene3D | Tetratricopeptide repeat domain | 171 | 336 | IPR011990 | GO:0005515 | |
Seca1g03297 | 632 | CDD | EF1_alpha_III | 423 | 517 | - | - | |
Seca1g03297 | 632 | Gene3D | Translation factors | 416 | 520 | - | - | |
Seca1g03297 | 632 | Pfam | Elongation factor Tu C-terminal domain | 418 | 520 | IPR004160 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca1g03297 | Seca-Chr1 | 92318616 | 92320641 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca1g03297 | 408 | 531 | Eukaryotic Initiation Factors Gene Family | AT1G07930 | 78.226 | 1.06e-59 | 202 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca1g03297 | K03231 | - | osa:4331813 | 201.83 |