Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03273 ATGGATAATACAGATGATGTTTCAGTTGTTAAGTTAGATGAGGAGAATGACCCTAGTTATGATGTTGGTCGTGATGAAAGTATTAGTGCAGATCCCTCAGATATTAGAGAACAGAGCCAGCCTGCAGATATGGATGTTGGAGATGGGCAATATAAGAGGATAACAAATCTGACCAGTGATGATGTAATGGGTTTGGAGTTTGTAACTCAGCATGCTGCTTTCAAATTTTATGAGGAATATGCTAAAGCCCATGGTTTTGTAGTAAGGAAAGATGATATAAGGAAGGATTTTAGGGGTAACACTGTGATGCGAAAATTTGTATGCAATAGACAAGGATTGAGAAATAAAAAGCATTTCATGAGGGTAGACAGGAAAAGGGAGCACAGAGCAATTACCCGAACAAATTGTGGAGCTAAGCTTCAGGCACGTTTCAATCGCAAGAAATCAAAATGGATAGTGGTGTCTTTTGAGGAGGCACATAATCACAAGCTAACCCCTTCAGTATATGTGCATTTATATCCTGCTTATCGTAAAATGAGTGATGCAGATAAAACTCAGGTTGATAGTTTACGTGCCCATGGTGTTAGAACTTGTCACATTATTGGCTACATGTTGGCCCAAAAAGGCGGATATGGTGGTTTGGGTTTTTGTAAAATAGATGTATACAACTATATTGACAGCAAAAGTCGTGAGCAGGTAAAAGATGGTGATGCAATTGCTGCTTTAAGCTATTTAGAACGTAATGCACAACATGATCCAACATTATTTGCACATAGCATTGTTGAATTCATGCATAGCTTTGAACAAGCTTTGAGGGAATACAGGCACAATGAATTGACTGCGGATTTTAAGTCATTGTTTTCTAAACCAGTATTGATAACATGTTTGCAAAAAATTGAGAGAGAAGCTTCAAAGATTTACACTTTGGAGATGTTCAAAGAAGTTAGGCAGGAGATTGATAAGGTCGACGCCGTAATTGTTGTTGACCGAAATGTTAATGATAAAAATTTTATGTTTACACTGAATCAGTATTGTAACCGTGGGCGTGAGATGCATGTTTTGTATGATGCTTCAGATAGCTCTTTTTCATGTGATTGTAGACTTTTTGAAAGTCGTGGTATTCCATTCTCACATATATTTTGTGCCATGAAAAATGAGCATGTTGAATTTATTCCCACAAGTTTGATTTTGAAACGCTGGATGAAAACTGCCAAGAGTGATTTCACTACTTCTATTGAATCTAAGGAAGTTCATTCTGATGTGTTGGATGGAGCTCGGTTATCATCCTTAACTTCTTATTCTTCTAATTTTGTTAAGGTTGCTTATGAAAATAAAGGGTGCTTCAATGAGATAGTGGATGATATTTTTAAGCTGACCCTGAAGTATCAGAAGAAAACGGTGTCTAATGGTCAAAATTCATCATCTTCATTCATTATTAGTGATCCGACTATCGTTAAAACTAAAGGTGCTCTGAAGAAGAAAAAGTATGCGAAGAAGAGGAGGAGACATTGTTTTAATTGCTCTGGAACAGGACACACAATTAGGACTTATCCTAAGCTTGGCGGCAGAGATGTGAAGGGTGCTAAGGATGATGAATTCCGTCCTTCAGAGTCTACTGACAACAGTGGCACAAATGATAGTGTAATGTTCTTATCAATTAATTTTTAA 1668 0.3711 MDNTDDVSVVKLDEENDPSYDVGRDESISADPSDIREQSQPADMDVGDGQYKRITNLTSDDVMGLEFVTQHAAFKFYEEYAKAHGFVVRKDDIRKDFRGNTVMRKFVCNRQGLRNKKHFMRVDRKREHRAITRTNCGAKLQARFNRKKSKWIVVSFEEAHNHKLTPSVYVHLYPAYRKMSDADKTQVDSLRAHGVRTCHIIGYMLAQKGGYGGLGFCKIDVYNYIDSKSREQVKDGDAIAALSYLERNAQHDPTLFAHSIVEFMHSFEQALREYRHNELTADFKSLFSKPVLITCLQKIEREASKIYTLEMFKEVRQEIDKVDAVIVVDRNVNDKNFMFTLNQYCNRGREMHVLYDASDSSFSCDCRLFESRGIPFSHIFCAMKNEHVEFIPTSLILKRWMKTAKSDFTTSIESKEVHSDVLDGARLSSLTSYSSNFVKVAYENKGCFNEIVDDIFKLTLKYQKKTVSNGQNSSSSFIISDPTIVKTKGALKKKKYAKKRRRHCFNCSGTGHTIRTYPKLGGRDVKGAKDDEFRPSESTDNSGTNDSVMFLSINF. 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03273 555 Pfam FAR1 DNA-binding domain 75 165 IPR004330 -
Seca1g03273 555 MobiDBLite consensus disorder prediction 522 537 - -
Seca1g03273 555 SMART 26again6 362 389 IPR006564 GO:0008270
Seca1g03273 555 MobiDBLite consensus disorder prediction 1 48 - -
Seca1g03273 555 MobiDBLite consensus disorder prediction 1 32 - -
Seca1g03273 555 MobiDBLite consensus disorder prediction 518 545 - -
Seca1g03273 555 PANTHER OS01G0519700 PROTEIN 62 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03273 Seca-Chr1 91646867 91649173 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca1g03273 FAR1 6.5e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03273 - - ccaj:109792835 309.301