Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03255 ATGTATCATGCAAAGAAGTTTTCGCCAGCAACCATGGTGCCACATAAATCTCAAGGTGGAGCTGAACAACTTGCAAATGTTGGGGTTTTGGATGGATCTGCAGTGAAAAATGCCACACCTACTGGGGCAAGTGGGAAACAACGTTTACGTTGGACATCCGATCTTCATGACCGTTTTGTGGATGCAATTACACAACTTGGTGGACCAGATAGGGCAACGCCAAAAGGGGTTCTAAGAGTGATGGGTGTACCTGGACTTACCATTTATCACGTTAAAAGTCATTTACAGAAATATCGCCTTGCAAAGTATTTGCCAGAATCACCAGCTGATGGAAAAGACTCTAAAGATGAGAAAAGGAATTCTGGAGATTGCATTTCTGGCACAGATTCTTCCCCGGGATTGCAAATCAATGATGCTTTAAGAATGCAGATGGAGGTTCAGAAACGTTTGCATGAACAGCTTGAGGTTTGA 471 0.4331 MYHAKKFSPATMVPHKSQGGAEQLANVGVLDGSAVKNATPTGASGKQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRLAKYLPESPADGKDSKDEKRNSGDCISGTDSSPGLQINDALRMQMEVQKRLHEQLEV. 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03255 156 NCBIfam myb-like DNA-binding domain, SHAQKYF class 46 101 IPR006447 GO:0003677
Seca1g03255 156 FunFam Myb family transcription factor 45 103 - -
Seca1g03255 156 SUPERFAMILY Homeodomain-like 45 101 IPR009057 -
Seca1g03255 156 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 44 156 IPR044848 GO:0003700
Seca1g03255 156 MobiDBLite consensus disorder prediction 106 123 - -
Seca1g03255 156 Pfam MYB-CC type transfactor, LHEQLE motif 134 156 IPR025756 -
Seca1g03255 156 Coils Coil 137 156 - -
Seca1g03255 156 MobiDBLite consensus disorder prediction 105 135 - -
Seca1g03255 156 Gene3D - 45 104 - -
Seca1g03255 156 Pfam Myb-like DNA-binding domain 49 99 IPR001005 -
Seca1g03255 156 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 43 103 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03255 Seca-Chr1 91283809 91286341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03255 30 156 G2-like Transcription Factor Family AT1G69580 46.479 3.89e-39 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca1g03255 Myb_DNA-binding 9.4e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03255 - - gmx:100783132 286.189