Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03253 ATGGGATCTCAAGGTGGGGCAATTCAAGAGCCAAAGACTGGACCTTTGGCTAGGCAAGGGTCCTTGTACAATCTCACCCTTGATGAGGTGCAAAACCAGCTTGGAAATTTAGGGAAACCCTTAGGAAGCATGAATCTGGATGAGTTGCTCAAGAGTGTGTGGACTGCTGAAGCTGCTCAGGCCTCTGGATTGGATTCTGGTACTGATGCTTATATGCAGCATGGTCAAGTAGCTTCTGGGTCATCTATGAATCCACAGGGGACCCTAACATTGTCTGGGGACCTTAGCAAGAAAACTATTGATGAGGTTTGGAGAGATATGCAACAGAAGAAGAGTTCTAATCAGGATAGGAAAACTCAAGAAAGACAACTTACATTGGGTGAGATGACCCTGGAGGATTTCTTGGTGAAGGCAGGGGTGGCTACTGAATCTTTAGCTACTGAGGATAATGATATGTCAGGAGGGGTTGATTCCCAACACAACACATCCCAGCATGCCCATTGGATGCAATACCAGCTCCCTTTAGTGCAGCAGGCACCACAACAACAACAGCATCAACATCAAAATCAGCAGAACAATATGATGCCGGGTTTTACAGGTTTTATGGCTGGTCATGTGGTTCAACAACCTATCTCAGTTGCGGTGAATCCAATTTTGGATGCAGGATACTCTGAAGCAATGGTGAATGTGTCACCATCTTCTTTAATGGGTACCTTATCAGATACACAAACTCCAAGTAGGAAAAGGGTTGCATCTGGTAATGTGGTTGAGAAAACTGTGGAGAGGAGGCAGAAGAGGATGATTAAAAATAGGGAATCTGCAGCTCGGTCACGAGCTAGAAAACAGGCTTACACACAAGAGCTGGAGATTAAAGTTTCACGTTTAGAAGAAGAGAATGAAAGGCTTAAAAGACAGCATGAGATAGAGAGGGTGTTGCCAAGTGTGCCACCACCTGATCCAAAGCATCAGCTTCGCAGAACTAGCTCAGCTCCCCTTTGA 999 0.4545 MGSQGGAIQEPKTGPLARQGSLYNLTLDEVQNQLGNLGKPLGSMNLDELLKSVWTAEAAQASGLDSGTDAYMQHGQVASGSSMNPQGTLTLSGDLSKKTIDEVWRDMQQKKSSNQDRKTQERQLTLGEMTLEDFLVKAGVATESLATEDNDMSGGVDSQHNTSQHAHWMQYQLPLVQQAPQQQQHQHQNQQNNMMPGFTGFMAGHVVQQPISVAVNPILDAGYSEAMVNVSPSSLMGTLSDTQTPSRKRVASGNVVEKTVERRQKRMIKNRESAARSRARKQAYTQELEIKVSRLEEENERLKRQHEIERVLPSVPPPDPKHQLRRTSSAPL. 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03253 332 CDD bZIP_plant_BZIP46 262 307 - -
Seca1g03253 332 Pfam bZIP transcription factor 262 305 IPR004827 GO:0003700|GO:0006355
Seca1g03253 332 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 265 280 IPR004827 GO:0003700|GO:0006355
Seca1g03253 332 MobiDBLite consensus disorder prediction 307 332 - -
Seca1g03253 332 SUPERFAMILY Leucine zipper domain 262 308 IPR046347 GO:0003700|GO:0006355
Seca1g03253 332 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 260 305 IPR004827 GO:0003700|GO:0006355
Seca1g03253 332 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 2 260 312 - -
Seca1g03253 332 SMART brlzneu 258 326 IPR004827 GO:0003700|GO:0006355
Seca1g03253 332 Coils Coil 278 312 - -
Seca1g03253 332 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 16 331 IPR043452 GO:0003700|GO:0045893
Seca1g03253 332 Gene3D - 260 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03253 Seca-Chr1 91264392 91269052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03253 1 332 bZIP Transcription Factor Family AT3G56850 55.000 7.37e-108 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca1g03253 bZIP_1 1.6e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03253 K14432 - gmx:100783666 465.692