Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03252 ATGGGGAGGAAGCGAAAGGTCGCACCTAAATCTTCTCAATCACCCGAACCCCCACTCAAGCAGCACCATCCATCTCATCTTCAATCGGAGCTAGAACAAGACAATGCAGCCGAAGAATACGAGGAAGTCGAAGAAGAAGTAGAGGAAGAAGTAGAAGAAGAAGAAGAAGAGGAGGAGGAGGAGGAAGAAGAAGAAGATCAAGAAAATAACGACGAAGGGGAACAAGAGCAAGACGACGACCCGATCCAGAAGATTCTCGAACCCTTCAGCAAGGAACAGATCTTGAATCTCCTCATCGAGGCGGCGACGAAGCACCGTGACGTGGCGAACCGGATCCGCAAGGTGGCCGATGAGGATGCCGTCCACCGGAAAATCTTTGTCCATGGCCTTGGATGGGACACCACAGCCCAAACCCTAATCAACGCGTTTCAGCAATACGGTGAGATCGAGGACTGTAAGGCGGTGACGGACAAGGTCTCCGGCAAGTCCAAGGGCTACGGTTTCATCCTCTTTAAGACACGCCGTGGCGCACGCAACGCCCTCAAGCAGCCGCAGAAGAAGATCGGAAACCGCATGACGGCATGCCAGCTGGCATCCATTGGACCGGCGCAGCAGCAACAGCAGCTGCCACAACCAACTCTGCAGCATTCGCCACAGGTTTCTGAGTACACTCAGAGGAAGATCTATGTTAGCAACGTCGGTGCTGAACTCGATCCGCAGAAGCTTCTTGCTTTCTTCTCGCGGTTTGGGGAGATTGAGGAAGGGCCTTTAGGACTCGACAAGCTCACTGGAAAACCGAAAGGGTTCTGCTTGTTTGTTTATAGAACTGCTGAGAGTGCAAGAAGGGCTTTGGAGGAACCTCACAAGGAGTTTGAGGGGCATATTTTGCATTGCCAGAAGGCAATTGATGGTCCAAAGATGGGTAAGACGCAGTATCAGCAGCAGCCAGGGAATCCTTTGGGACAGAGGACCCAATTTCAGAGAAATGACAGTACCAGTTTTGTTGGTGCTGGCTCAACTGCTGCTGCTGCCGCCGCTCAACCGGGACACTTGATGGCCCCGTCTGGACCCGGAATAGGGTACAATCAGGCTGCACAGGCACTGAACCCGGCTCTTGGGCAAGCATTGACAGCACTGCTTGCCTCTCAGGGTGCTACGTTGGGGCTTAGTAATTTGTTGGGGAGCCTCGGAACTAGTGGTGCGGTTAACCCAGGTGTACCAGCTGCTGCAGGTCATGGAGTCCAGAGTGGATACAGTGCCCAGCAAAATATAAGCCCGGGTGTTATTGGAGCATATGGGAATCAGGTTGGATTGCAGGCGGCGTATCCAAATCAGCAGGTTGGTCAAGGTGGATCTGGAAGAGGGCAATATGGTGGCGCTGCACCTTACATGGGGCACTAG 1401 0.5318 MGRKRKVAPKSSQSPEPPLKQHHPSHLQSELEQDNAAEEYEEVEEEVEEEVEEEEEEEEEEEEEEDQENNDEGEQEQDDDPIQKILEPFSKEQILNLLIEAATKHRDVANRIRKVADEDAVHRKIFVHGLGWDTTAQTLINAFQQYGEIEDCKAVTDKVSGKSKGYGFILFKTRRGARNALKQPQKKIGNRMTACQLASIGPAQQQQQLPQPTLQHSPQVSEYTQRKIYVSNVGAELDPQKLLAFFSRFGEIEEGPLGLDKLTGKPKGFCLFVYRTAESARRALEEPHKEFEGHILHCQKAIDGPKMGKTQYQQQPGNPLGQRTQFQRNDSTSFVGAGSTAAAAAAQPGHLMAPSGPGIGYNQAAQALNPALGQALTALLASQGATLGLSNLLGSLGTSGAVNPGVPAAAGHGVQSGYSAQQNISPGVIGAYGNQVGLQAAYPNQQVGQGGSGRGQYGGAAPYMGH. 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03252 466 Gene3D - 205 316 IPR012677 -
Seca1g03252 466 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 205 IPR000504 GO:0003723
Seca1g03252 466 MobiDBLite consensus disorder prediction 1 79 - -
Seca1g03252 466 MobiDBLite consensus disorder prediction 447 466 - -
Seca1g03252 466 MobiDBLite consensus disorder prediction 34 78 - -
Seca1g03252 466 Coils Coil 26 77 - -
Seca1g03252 466 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 228 296 IPR000504 GO:0003723
Seca1g03252 466 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 191 IPR000504 GO:0003723
Seca1g03252 466 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 226 307 IPR000504 GO:0003723
Seca1g03252 466 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 39 309 - -
Seca1g03252 466 SMART rrm1_1 124 196 IPR000504 GO:0003723
Seca1g03252 466 SMART rrm1_1 227 299 IPR000504 GO:0003723
Seca1g03252 466 SUPERFAMILY RNA-binding domain, RBD 215 326 IPR035979 GO:0003676
Seca1g03252 466 SUPERFAMILY RNA-binding domain, RBD 116 208 IPR035979 GO:0003676
Seca1g03252 466 Gene3D - 28 204 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03252 Seca-Chr1 91251519 91252919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03252 225 318 C2H2 Transcription Factor Family AT2G19380 36.842 4.25e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03252 K12741 - gmx:100784200 572.007