Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03240 ATGGGACGAACTAGGCTTGTGGTGTCTGATTTTGTCCTGTCTTTCATGTGGGTATGGTCTGGTGTTCTGGTTCGGATATTTGTCTTCAAAAATCTAGGATTGGGTCATGGCCATCTCGGTGAGATTGTGAAGACTACCTTCTCCATCGCCAACATGTTCTTATTTGCTTTCCTTGTCAAGGTTTCCCGTGGTGGGGCCTACAATCCCCTAACCGTTTTGTCTAACGCTATCTCTGGGGATTTCGACAACTTCTTTTTCTGTGTTGGGTATAGAATTCCCGCTCAGGTGGTTGGATCTATTGTTGGAGTTAAACTTCTAATTGATACCATTCCTGAAGTAGGACGGGGACCACGTTTGAATGTTGACATTCATCAGGGTGCATTGACAGAAGGATTACTAACATTTGCAATTGTAAGCATTTCACTTGGTCTTGCCACAAAAGTTCATGGAAGTTTCTTCATGAAGACTTGGATTTCCAGCCTCTCCAAGTTAGCACTTCATATACTTGGCTCTGATTTGACTGGTGGTTGTATGAACCCTGCATCTGTAATGGGATGGGCTTTTGCTAGAGGGGATCACATAACAAAGGAGCACATCCTTGTATACTGGCTTGCCCCTATAGAGGCAACTATTTTGGCAGTGTGGATATTTAAATTGATATTCCGACCTGTAGAAGATAAAACAGTCTCAAAAAGTAAATCAGATTGA 708 0.4266 MGRTRLVVSDFVLSFMWVWSGVLVRIFVFKNLGLGHGHLGEIVKTTFSIANMFLFAFLVKVSRGGAYNPLTVLSNAISGDFDNFFFCVGYRIPAQVVGSIVGVKLLIDTIPEVGRGPRLNVDIHQGALTEGLLTFAIVSISLGLATKVHGSFFMKTWISSLSKLALHILGSDLTGGCMNPASVMGWAFARGDHITKEHILVYWLAPIEATILAVWIFKLIFRPVEDKTVSKSKSD. 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03240 235 Pfam Major intrinsic protein 5 217 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca1g03240 235 SUPERFAMILY Aquaporin-like 4 227 IPR023271 -
Seca1g03240 235 PRINTS Major intrinsic protein family signature 5 24 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca1g03240 235 PRINTS Major intrinsic protein family signature 160 182 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca1g03240 235 PRINTS Major intrinsic protein family signature 129 147 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca1g03240 235 PRINTS Major intrinsic protein family signature 87 106 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca1g03240 235 PRINTS Major intrinsic protein family signature 200 220 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca1g03240 235 Gene3D Glycerol uptake facilitator protein. 3 235 IPR023271 -
Seca1g03240 235 PANTHER AQUAPORIN SIP2-1-RELATED 1 234 IPR044226 GO:0015267
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03240 Seca-Chr1 90944239 90948381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03240 1 235 Major Intrinsic Protein MIP AT3G56950 61.603 4.85e-105 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03240 K09875 - gmx:100786138 394.43