Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03227 ATGATGTTTATAGAGAATTCATTTTGGTTGAAGTTTCGTTCCGAAATTAATCATCGCAAAGTTATCCTAAGGGACCCTGCTGACTTTATTTTTAATGTTTCTATAAGTTGCAATGGGTATAATAGGGTTGGATTTATTAATGGAGTTGAAAACATCATTAGGCGCTATAACGTTGTTGAGAGTTACTGGGTGTTATTTACATATAAAGGGAACAATGAGTTTGACATTAGATTAGTAAAGGGAACATTGAAGGTCAATTATCCTTGGGTGGAAAGGGATGAAGATGTTGATGTCCATCCTATGGAGTATGAGGAGGACCTTGAGGAGCCCCTATTTTTGTGGGAAGTTACTTTGACAAAGGCAGCTGCATCCGGTGGTAATGCTTTGCTCATACCTGCTAGGATTGTGAGGGACATGTTGGACAAGAATCAGGAAGTTGTGACTGTTATAGATGAGGGTGGTAAATTAATTCCATGCAAGTTGCTGAAGCCTAAAAGACGACCAAGTGAGCGGTACCTATCCGGTGGATGGTATGAGTTTATTCGGGGAAAGAAATTGAAGGTTGGGGATAAGATTAGATTTTACTCAGATGACAGTATGGAAACTATGTCTGTGTTGTTGATCGCATTTGACTTGATGTTTGAAAAAAATTTGCAGTTCTAA 663 0.3861 MMFIENSFWLKFRSEINHRKVILRDPADFIFNVSISCNGYNRVGFINGVENIIRRYNVVESYWVLFTYKGNNEFDIRLVKGTLKVNYPWVERDEDVDVHPMEYEEDLEEPLFLWEVTLTKAAASGGNALLIPARIVRDMLDKNQEVVTVIDEGGKLIPCKLLKPKRRPSERYLSGGWYEFIRGKKLKVGDKIRFYSDDSMETMSVLLIAFDLMFEKNLQF. 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03227 220 SMART B3_2 114 213 IPR003340 GO:0003677
Seca1g03227 220 SUPERFAMILY DNA-binding pseudobarrel domain 7 78 IPR015300 -
Seca1g03227 220 Pfam B3 DNA binding domain 115 205 IPR003340 GO:0003677
Seca1g03227 220 CDD B3_DNA 110 208 IPR003340 GO:0003677
Seca1g03227 220 ProSiteProfiles B3 DNA-binding domain profile. 114 211 IPR003340 GO:0003677
Seca1g03227 220 SUPERFAMILY DNA-binding pseudobarrel domain 110 203 IPR015300 -
Seca1g03227 220 Gene3D - 101 210 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03227 Seca-Chr1 90571626 90574313 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca1g03227 B3 2.3e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03227 - - mtr:11425977 65.4698