Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03206 ATGGATGAAGAGGAAGAGCCTAAACAAAACCAGGACAAGCAGAAGGTGATCATATTGGGAGAATCTAATGCAAGTGAGGATTCAAAGAATCCCAAAATAGATTCTAAAGAGGGTGGAGAAGACTCAACAAATTATCCCAAAGAAAGCTCTCCATTGCTTCTTTTTGGATTCATTATCGATCCTACTACAGGAAATCAAAAGGCTGCTTACTCTTGTGGTTTTTGTAACAAAAGCTTTGTTACTCCACAAGCATTAGGTGGCCACCAAAATGGCCACAAATGGGAGAGAAATCTCAAACAAGGAATCCAGGCTATAAATATAGCCAGGGGAAGGAGCTCATGCTATGATTTTTCATCACCAACCCTGCCTAGCTATGAACCTTTTAGTGGAGGCCTAAACCCCATGACCCAACAACACCTTGAGAAGTATCATCCCCCAACATCCTATCAATATTATGGACTAGACAAAATGATTCAACATACAGGGGTGGCAAACACTACTAGTTTTGGCACAGGGTATGGTATGCTAGACATTGGAAATAGTAGTACATTTCAGCATCCTGAGATGGTACAATTCAATCGTGGGTTTGAGACTAGCAATTATGATAGAATGGAAAATGTTTATGGGATGCATTCACAGACTGATCATGAAGTCAAAGAGACTGGAAAAACAGGATTTGACTTTGTCTTGCTACCAATGGGAAATGATCAGATCATAGGGGATCAACGGGTTACGAGCTCAGAGATTGACTTTGGTTTGCTTCCAAAGAGAGATGGTGAAGACACAGAGATTCAGCATAATGATGAAGTTTCGAAAATTGACTTGAGCCTTAATCTTTAA 840 0.4024 MDEEEEPKQNQDKQKVIILGESNASEDSKNPKIDSKEGGEDSTNYPKESSPLLLFGFIIDPTTGNQKAAYSCGFCNKSFVTPQALGGHQNGHKWERNLKQGIQAINIARGRSSCYDFSSPTLPSYEPFSGGLNPMTQQHLEKYHPPTSYQYYGLDKMIQHTGVANTTSFGTGYGMLDIGNSSTFQHPEMVQFNRGFETSNYDRMENVYGMHSQTDHEVKETGKTGFDFVLLPMGNDQIIGDQRVTSSEIDFGLLPKRDGEDTEIQHNDEVSKIDLSLNL. 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03206 279 MobiDBLite consensus disorder prediction 1 47 - -
Seca1g03206 279 MobiDBLite consensus disorder prediction 27 43 - -
Seca1g03206 279 Gene3D Classic Zinc Finger 48 111 - -
Seca1g03206 279 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Seca1g03206 279 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 6 279 IPR044246 GO:0009788
Seca1g03206 279 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 97 IPR013087 -
Seca1g03206 279 SUPERFAMILY beta-beta-alpha zinc fingers 67 98 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03206 Seca-Chr1 89970685 89971524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03206 31 115 C2H2 Transcription Factor Family AT5G01860 36.364 3.48e-10 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca1g03206 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03206 - - lang:109329350 124.405