Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03204 ATGGATGAGCAAGGACAAGAATTCAAAGCTATAGTGGCAAATGGATTAAAGCTAGGAGCATCTCTAGCTATGGCAGAGCACATTGATTGGCTGCGCTGGGCATTCCCACTAGAAGAGGAGGCTTTTGCAAAACATGGAGCACGTAGGGACATACTCACCAGAGCCATCATGGAAGAGCATACTCAGGCTCGCAAGCAATCTGGTGGTGCCAAGCAACATTTCGTTGATGCACTCTTCACATTGCAAGAAAAATATGACCTTAGTGAAGACACCATCATTGGTCTCCTTTGGGACATGATCACAGCTGGAATGGACACAACCGCAGTCTCAGTAGAGTGGGCCATGACTGAGTTGATAAAGAACCCAAGAGTGCAACAAAAGGCTCAAGAGGAGCTTGACAAGGTGATTGGGTTTGAAAGGGTCATGACTGAAAATGACTTCTCAAGCCTCCCTTATCTGCGATGTATAGCCAAAGAGGCTCTGAGGCTGCACCCAGCAACACCATTAATGCTCCCACATCGTGCTAATGCCAATGTCAAAGTTGGTGGCTATGATATTCCCAAAGGATCCAATGTTCATGTGAATGTATGGGCTGTAGCCCGTGACCCAGCTGTGTGGACAAACCCATTGGAGTTTAGGCCCGAGAGGTTTCTTGAAGAGGATGTGGACATGAAGGGCCATGACTTTAGGCTACTACCATTTGGAGCTGGTCGAAAGGTATGCCCAGGTGCACAACTTGGAATCAATTTGGTGACATCCATGTTGGGTCACCTTTTGCAACATTTCTGTTGGACACCACCTGAAGGAGTGAAGCCTGATGAGATTGACATGGCTGAGAACCCTGGATTGGTGACATATATGAGGACCCCACTACAGGCTGTGGCTACTTCTAGGCTCCCCTCAGACTTGTATAAATGTGCCTGCTGA 927 0.4779 MDEQGQEFKAIVANGLKLGASLAMAEHIDWLRWAFPLEEEAFAKHGARRDILTRAIMEEHTQARKQSGGAKQHFVDALFTLQEKYDLSEDTIIGLLWDMITAGMDTTAVSVEWAMTELIKNPRVQQKAQEELDKVIGFERVMTENDFSSLPYLRCIAKEALRLHPATPLMLPHRANANVKVGGYDIPKGSNVHVNVWAVARDPAVWTNPLEFRPERFLEEDVDMKGHDFRLLPFGAGRKVCPGAQLGINLVTSMLGHLLQHFCWTPPEGVKPDEIDMAENPGLVTYMRTPLQAVATSRLPSDLYKCAC. 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03204 308 FunFam Predicted protein 100 293 - -
Seca1g03204 308 SUPERFAMILY Cytochrome P450 2 298 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g03204 308 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 234 243 IPR017972 GO:0005506|GO:0016705
Seca1g03204 308 PRINTS P450 superfamily signature 155 166 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g03204 308 PRINTS P450 superfamily signature 102 119 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g03204 308 PRINTS P450 superfamily signature 232 241 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g03204 308 Gene3D Cytochrome P450 1 302 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g03204 308 PANTHER CYTOCHROME P450 98A9 3 305 - -
Seca1g03204 308 Pfam Cytochrome P450 23 282 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g03204 308 PRINTS E-class P450 group I signature 154 172 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g03204 308 PRINTS E-class P450 group I signature 231 241 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g03204 308 PRINTS E-class P450 group I signature 91 108 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g03204 308 PRINTS E-class P450 group I signature 195 219 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g03204 308 PRINTS E-class P450 group I signature 111 137 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g03204 308 PRINTS E-class P450 group I signature 241 264 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03204 Seca-Chr1 89943181 89944770 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03204 1 305 Monolignol Biosynthesis Gene Families AT2G40890 81.311 0.0 544
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03204 K09754 - pop:7495679 570.081