Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03203 ATGTCTCTGCTTCTCATAATTCCCATCTCACTCATCACCCTTTTCGTGTCTTACACGCTTTACCAGAAGCTACGGTTCAAGCTCCCTCCCGGTCCACGTCCATGGCCGGTCGTCGGTAACCTCTACGACATAAAACCGGTGAGGTTCCGGTGCTTCGCGGAGTGGGCCCAGAGCTATGGGCCCATTATATCGGTTTGGTTTGGTTCGACGCTAAACGTCATCGTTTCGAATTCAGAATTGGCGAGAGAGGTTCTGAAGGAGAATGACCAGCATCTCGCTAACCGGCACCGGAGTAGGTCGGCGGCGAAGTTTAGTAGAGACGGAAAGGATCTGATTTGGGCCGATTATGGGCCTCACTATGTGAAGGTTAGGAAGGTTTGCACGTTGGAACTGTTCACCCCAAAGAGACTTGAAGCTTTGAGGCCTATCAGAGAAGATGAAGTAACTGCCATGGTTGAGTCCATTTTCAAAGATTCCACACGTTCTGCAGAAAATTCAGGGAAAGGTATATTGGTGAAGAGGTACTTGGGGGCGGTGGCATTCAACAACATAACGAGGCTAGCATTTGGGAAAAGATTTGTGAACTCAGAAGGTGTGATGGATGAGCAAGGACAAGAATTTAAAGCTATAGTGGCAAATGGATTAAAGCTAGGAGCTTCTCTAGCTATGGCAGAGCACATTGATTGGCTGCGTTGGGCGTTCCCACTAGAAGAGGAGGCTTTTGCAAAACATGGAGCACGTAGGGACAGACTCACCAGAGCCATCATGGAAGAGCATACTCAGGCTCGCAAGAAATCTGGTGGTGCCAAGCAACATTTCGTTGATGCACTCCTCACATTGCAAGAAAAATATGACCTTAGTGAAGACACCATCATTGGTCTCCTTTGGGACATGATCACAGCTGGGATGGACACAACCGCAATCTCAGTAGAGTGGGCCATGGCTGAGTTGATAAAGAACCCAAGAGTGCAACAAAAGGCTCAAGAGGAGCTTGACAGGGTGATTGGGTTTGAAAGGGTCATGACTGAAAATGACTTCTCAAGCCTCCCTTATCTACAGTGTATAGCCAAGGAAGCTCTGAGGCTGCACCCACCAACACCATTAATGCTCCCACATCGTGCTAATGCCAATGTCAAAGTTGGTGGCTATGACATTCCCAAAGGCTCCAATGTTCATGTGAATGTATGGGCCGTAGCCCGTGACCCAGTTGTGTGGAAAGACCCATTGGAGTTTAGGCCCGAGAGATTTCTTGAAGAGGATGTGGACATGAAGGGCCATGACTTTAGGCTATTACCATTTGGAGCTGGTCGTAGGGTATGCCCAGGTGCACAACTTGGAATCAATTTGGTGACATCCATGTTGGGTCACCTTTTGCACCATTTCTGTTGGACACCACCTGAAGGAGTGAAGCCTGATGAGATTGACTTGGCTGAGAACCCTGGATTGGTGACATATATGAGGACCCCACTACAGGCAGTGGCTACTCCTAGGCTCCCCTCAGATTTGTATAAACGTGTGTCTGCTGATATCTAA 1533 0.4847 MSLLLIIPISLITLFVSYTLYQKLRFKLPPGPRPWPVVGNLYDIKPVRFRCFAEWAQSYGPIISVWFGSTLNVIVSNSELAREVLKENDQHLANRHRSRSAAKFSRDGKDLIWADYGPHYVKVRKVCTLELFTPKRLEALRPIREDEVTAMVESIFKDSTRSAENSGKGILVKRYLGAVAFNNITRLAFGKRFVNSEGVMDEQGQEFKAIVANGLKLGASLAMAEHIDWLRWAFPLEEEAFAKHGARRDRLTRAIMEEHTQARKKSGGAKQHFVDALLTLQEKYDLSEDTIIGLLWDMITAGMDTTAISVEWAMAELIKNPRVQQKAQEELDRVIGFERVMTENDFSSLPYLQCIAKEALRLHPPTPLMLPHRANANVKVGGYDIPKGSNVHVNVWAVARDPVVWKDPLEFRPERFLEEDVDMKGHDFRLLPFGAGRRVCPGAQLGINLVTSMLGHLLHHFCWTPPEGVKPDEIDLAENPGLVTYMRTPLQAVATPRLPSDLYKRVSADI. 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03203 510 PANTHER CYTOCHROME P450 98A9 11 504 - -
Seca1g03203 510 SUPERFAMILY Cytochrome P450 29 497 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g03203 510 Pfam Cytochrome P450 29 477 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g03203 510 CDD CYP98 59 492 - -
Seca1g03203 510 Gene3D Cytochrome P450 21 502 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g03203 510 PRINTS P450 superfamily signature 354 365 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g03203 510 PRINTS P450 superfamily signature 301 318 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g03203 510 PRINTS P450 superfamily signature 431 440 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g03203 510 FunFam Cytochrome P450 22 501 - -
Seca1g03203 510 PRINTS E-class P450 group I signature 56 75 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g03203 510 PRINTS E-class P450 group I signature 290 307 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g03203 510 PRINTS E-class P450 group I signature 430 440 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g03203 510 PRINTS E-class P450 group I signature 394 418 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g03203 510 PRINTS E-class P450 group I signature 440 463 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g03203 510 PRINTS E-class P450 group I signature 80 101 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g03203 510 PRINTS E-class P450 group I signature 353 371 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g03203 510 PRINTS E-class P450 group I signature 179 197 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g03203 510 PRINTS E-class P450 group I signature 310 336 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g03203 510 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 433 442 IPR017972 GO:0005506|GO:0016705
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03203 Seca-Chr1 89798103 89803436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03203 5 510 Monolignol Biosynthesis Gene Families AT2G40890 79.842 0.0 873
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03203 K09754 - jre:109008126 941.799