Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03201 ATGGCATTCTCTCTGCTAAGCCACTCTTTGGAAAATGAACTGAAAATTGAAGATTCAGAAGAGTTCCCTTTCATTGAAATTGGAAATGAAGGTCTCACAAAACGGATTCTCAGAAAAGGAGTCACTTGGCAAACTCCATTCTCTGGAGACGAAGTAGAAGTTCATTTCAGAGGACATATTGAAAATGGAGCATCTCTTGAATCCAGTTATGATAAAGGGTCAACATTTCGTTTCAAATTAGGCCAATGTGAGGTTATCAAAGGTTGGGATGAAGGAGTTGCCACCATGAAGAAAAGGGAGAGAGCAATCTTCAAAATACCACCTAACTTAGCATATGGGGCAGTAGGTTCTCCACCATTGATTCCTCCCAATGCAACTCTCATTTTTGAGATTGAAATGCTTTCTTGGAGTGCCATCAGGGACTTAACTGGTGATGGAGGAATCATGAAAAAGATAATACAAGAGGGAGAAGGATGGGCTACTCCTAGAGAGGCTGATGAGGTCCTAGTGAAATATGAAGCAAGGCTAGAGAATGGGATGCTTGTTAAGTCTGATACAGGTGTGGAGTTTAATGTAAGTGAGGGACATAACTTTGCAGATGGGCTTAGTCAGAATTCAAATAGAACCACTGAGCTTGATGGTTTACCAGATTCTAATTTAACTACAATCAAACTTGAGCTGATGTCATGGAATGTTGTTACTGATGTCTCAGGAGATAAGAAGATACTGAAAAAGATTAAGAAAGTTGGTGAGGGATTTGATCGTCCAAATGAAGGATCCCAAGTGAAAGTGATATATTTGTGTAAAAGAGAAGATGGTGCAATTATTGAGAGAAAAGGGTCAAAGGAAGAACCTTTTGAATTCACAACTCAGGAAGAACAGGTACCTGAGGGTCTAGAAAGAGCAATAATGACAATGAAAAAAGCAGAACAAGCTCTGGTGACTATCAATTCTGAATATTTGTGTGACCAAAATAATTTACAAGGAAACGCGGCCAATGATAAAGTCCTTTATTATGAAGTTGAAATGGTTGATTTCATTAAGGTTAGTTTCTCCTATATGTTACTAATATCAAGTTCCATTAAAATAACAAAAGGAAATATGTGTGGAGTTTGTCATGAACCAATTATCCCAAGTTTTCTAAACATTCAATACATCAACAAAATATTTCTCTTTCCTTAG 1182 0.3756 MAFSLLSHSLENELKIEDSEEFPFIEIGNEGLTKRILRKGVTWQTPFSGDEVEVHFRGHIENGASLESSYDKGSTFRFKLGQCEVIKGWDEGVATMKKRERAIFKIPPNLAYGAVGSPPLIPPNATLIFEIEMLSWSAIRDLTGDGGIMKKIIQEGEGWATPREADEVLVKYEARLENGMLVKSDTGVEFNVSEGHNFADGLSQNSNRTTELDGLPDSNLTTIKLELMSWNVVTDVSGDKKILKKIKKVGEGFDRPNEGSQVKVIYLCKREDGAIIERKGSKEEPFEFTTQEEQVPEGLERAIMTMKKAEQALVTINSEYLCDQNNLQGNAANDKVLYYEVEMVDFIKVSFSYMLLISSSIKITKGNMCGVCHEPIIPSFLNIQYINKIFLFP. 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03201 393 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 259 347 IPR001179 GO:0003755
Seca1g03201 393 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 49 137 IPR001179 GO:0003755
Seca1g03201 393 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 240 350 - -
Seca1g03201 393 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 255 343 IPR001179 GO:0003755
Seca1g03201 393 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 46 134 IPR001179 GO:0003755
Seca1g03201 393 SUPERFAMILY FKBP-like 26 137 - -
Seca1g03201 393 Gene3D - 24 141 IPR046357 GO:0003755
Seca1g03201 393 Gene3D - 232 349 IPR046357 GO:0003755
Seca1g03201 393 Gene3D - 142 208 IPR046357 GO:0003755
Seca1g03201 393 Coils Coil 299 319 - -
Seca1g03201 393 FunFam Peptidylprolyl isomerase 3 138 - -
Seca1g03201 393 SUPERFAMILY FKBP-like 236 347 - -
Seca1g03201 393 SUPERFAMILY FKBP-like 142 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03201 Seca-Chr1 89727507 89733067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03201 25 353 Calmodulin-binding Proteins AT5G48570 47.778 1.65e-103 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03201 - - gmx:100785412 565.074