Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03200 ATGCTTGAAAACAGCTTCAAGCTTCATACCACTCTTAATCCTGTCCAGAAACAAGCACTTGCTGACCAATTGAATTTAAAGACAAGACAAATTGAAGTTTGGTTTCAGAACAGAAGAGCAAGAACAAAGTTGAAGCAAACAAAGGTGGATTATGAGTTGTTGAAAAAACAGTGTCAAACAAAAGATGTGGACAACAGAAACGATGGGAGAACTAAGCCCAGTAAGTGCCTTATCTCTTCTGACATGATATTAGTTTTAAATAAGACTCTTACATTTGCTTGGGTGAACTTTTTCTTTTCTAGATTTGTAGCAGGTGAAGCCATTGCTTCGTAG 333 0.3694 MLENSFKLHTTLNPVQKQALADQLNLKTRQIEVWFQNRRARTKLKQTKVDYELLKKQCQTKDVDNRNDGRTKPSKCLISSDMILVLNKTLTFAWVNFFFSRFVAGEAIAS. 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03200 110 Pfam Homeodomain 2 43 IPR001356 GO:0003677
Seca1g03200 110 SMART HOX_1 1 49 IPR001356 GO:0003677
Seca1g03200 110 CDD homeodomain 2 46 IPR001356 GO:0003677
Seca1g03200 110 Coils Coil 37 57 - -
Seca1g03200 110 ProSiteProfiles 'Homeobox' domain profile. 1 45 IPR001356 GO:0003677
Seca1g03200 110 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 1 67 - -
Seca1g03200 110 ProSitePatterns 'Homeobox' domain signature. 20 43 IPR017970 GO:0000981|GO:0006355
Seca1g03200 110 SUPERFAMILY Homeodomain-like 1 54 IPR009057 -
Seca1g03200 110 Gene3D - 1 43 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03200 Seca-Chr1 89707756 89711830 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03200 1 66 Homeobox Transcription Factor Family AT4G37790 72.727 7.70e-28 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Seca1g03200 Homeodomain 8.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03200 K09338 - gmx:100812222 113.62