Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03199 ATGGAAGGAGATGGTTTTTGTGGTGGTTTTTTTCAGAGGTGCAAGCCTTACATAGCTATGATTTCTCTGCAATTCGGGTTCGCTGGTATGAACATAATCACAAAGGTGTCACTCAACCGTGGCATGAGTCACTATGTGCTTGTGGTTTATAGACATGCCTTTGCTACAGCAGCTATTGCTCCATTTGCTCTTGTTCTTGAGAGGAAAGTGAGGCCCAAGATTACATTTCTTATGTTCATGCAAATGTTTGTGTTGGGTCTCCTTGGGCCTGTGATTGACCAGAACTTATACTATGCTGGACTGAAATTCACTTCCCCAACTTACTCATGTGCTATAAGCAACATGCTCCCTGCAATGACCTTTGTTATGGCAGTTATTTGCAGGATGGAGAAAGTGGACATAAGAAAGGTAAGATGTCAAGCAAAGGTTATTGGAACTGTAGTTACAGTTGCTGGGGCCATGTTGATGACATTATACAAAGGGCAAGTCATTAATTTCTTGGGGTCTCAATACATGCATCATCCAAGAAACTATGTGCCTGAAAACACCACTGATTCTGCTGAGAAGGATTGGGTTAAGGGTTCTATTCTCCTCATAATTGCTACCCTTGCTTGGGCTTCTTTCTTCATCCTCCAGGCAGTGACATTAAGAAAATACTCAGCTCAGCTCTCACTCACAGCAATAGTGTGTTTCTTGGGCACACTTCAATCAATTGCTGTTACCTTTGTCATGGAACACAAGCCATCTGTTTGGAACATTGGCTGGGACATGAACCTGCTTGCTGCAGCCTATGCAGGAATAGTATCATCAGGTATCACAATCTATGTTCAAGGGATCGTCATGCAGAAAAGAGGACCAGTTTTTGTCACAGCTTTCAGCCCTTTGATGATGATCATTGTAGCCATAATGGGCACTTTCATCCTTGCAGAAAAAATTTATCTTGGAGCGTAA 951 0.4248 MEGDGFCGGFFQRCKPYIAMISLQFGFAGMNIITKVSLNRGMSHYVLVVYRHAFATAAIAPFALVLERKVRPKITFLMFMQMFVLGLLGPVIDQNLYYAGLKFTSPTYSCAISNMLPAMTFVMAVICRMEKVDIRKVRCQAKVIGTVVTVAGAMLMTLYKGQVINFLGSQYMHHPRNYVPENTTDSAEKDWVKGSILLIIATLAWASFFILQAVTLRKYSAQLSLTAIVCFLGTLQSIAVTFVMEHKPSVWNIGWDMNLLAAAYAGIVSSGITIYVQGIVMQKRGPVFVTAFSPLMMIIVAIMGTFILAEKIYLGA. 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03199 316 PANTHER WAT1-RELATED PROTEIN 15 314 IPR030184 GO:0016020|GO:0022857
Seca1g03199 316 Pfam EamA-like transporter family 193 314 IPR000620 GO:0016020
Seca1g03199 316 Pfam EamA-like transporter family 17 157 IPR000620 GO:0016020
Seca1g03199 316 SUPERFAMILY Multidrug resistance efflux transporter EmrE 50 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03199 Seca-Chr1 89672462 89675008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03199 1 315 Nodulin-like Gene Family AT5G07050 67.712 2.43e-158 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03199 - - pvu:PHAVU_001G118300g 581.252